MXO03870.5prime Sequence
739 bp (695 high quality bases) assembled on 2007-07-18
> MXO03870.5prime
CAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCTCCTTTGGT
CTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCCGCGCTGCC
CTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCACACCTCAGC
ACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACTATGTGCAG
CTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCCTATGCCGA
GTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTATCTTGAGT
ATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATTTGCTCAAG
TTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGCTGGCACTA
CGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAACCTGGTGT
GCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCGGTGTTGGC
GGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTGTGGGGCAG
GCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGCCTGTGCGG
CCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGCGCTTTGTG
GTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTACTGGCCAT
TGAGCTGGTGGGACCGGAAAAGAGAGTTTTTTGCACCAT
MXO03870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-PA | 1815 | CG3790-RA | 1..731 | 9..739 | 3605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1947 | CG3790-RA | 80..813 | 6..739 | 3640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12874339..12874657 | 437..119 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 12873979..12874282 | 739..436 | 1490 | 99.3 | Minus |
| 2R | 25286936 | 2R | 12874818..12874933 | 121..6 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:19 has no hits.
MXO03870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:54 Download gff for
MXO03870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-PA | 1..731 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:28 Download gff for
MXO03870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 74..813 | 1..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:02 Download gff for
MXO03870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 74..813 | 1..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:02 Download gff for
MXO03870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12873979..12874280 | 438..739 | 99 | <- | Minus |
| 2R | 12874339..12874654 | 122..437 | 100 | <- | Minus |
| 2R | 12874818..12874935 | 1..121 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:28 Download gff for
MXO03870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8761484..8761785 | 438..739 | 99 | <- | Minus |
| arm_2R | 8761844..8762159 | 122..437 | 100 | <- | Minus |
| arm_2R | 8762323..8762440 | 1..121 | 97 | | Minus |
