MXO03871.5prime Sequence
812 bp (811 high quality bases) assembled on 2007-07-18
> MXO03871.5prime
CAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTGATCGCAAG
ATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACATCTGTCCAT
CGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCTCATCGCTC
AGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAACTTCAGGCC
AATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTCCTTCAAAT
GGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTCAGCAGTGG
CCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCAACATCTCA
TATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGGCCAAATAT
CATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGCCACGGCAC
AACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGGGTTCTATA
AGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTCCAGCCAGT
ACGGTTGGAACAGGGCAACGATCAGAACTTTGGCCATTCTCTGCTCCTCA
GGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCAGACAGAT
CCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATACAGCCACA
GTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATCCGGGGTA
TTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGGAGTTCTT
CATGCGACTCGT
MXO03871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11407-PA | 1617 | CG11407-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG11407-PA | 1617 | CG11407-RA | 568..803 | 577..812 | 1180 | 100 | Plus |
| CG6300-PA | 1614 | CG6300-RA | 403..479 | 411..487 | 160 | 88.3 | Plus |
| CG11659-PA | 1641 | CG11659-RA | 403..479 | 411..487 | 160 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11407-RA | 1789 | CG11407-RA | 63..865 | 9..812 | 3995 | 99.9 | Plus |
| CG11659-RA | 1705 | CG11659-RA | 51..832 | 9..791 | 1160 | 77.3 | Plus |
| CG6300-RA | 1724 | CG6300-RA | 51..799 | 9..758 | 1145 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19781507..19782022 | 149..665 | 2535 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19772486..19772948 | 641..178 | 890 | 80 | Minus |
| 3R | 32079331 | 3R | 19776544..19777033 | 641..151 | 890 | 79.2 | Minus |
| 3R | 32079331 | 3R | 19782075..19782221 | 666..812 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 19781308..19781451 | 9..152 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 19773042..19773175 | 142..9 | 220 | 77.6 | Minus |
| 3R | 32079331 | 3R | 19777097..19777230 | 142..9 | 220 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:31 has no hits.
MXO03871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:59 Download gff for
MXO03871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-PA | 1..803 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:22 Download gff for
MXO03871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-RA | 54..865 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:16 Download gff for
MXO03871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11407-RA | 54..865 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:16 Download gff for
MXO03871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19781299..19781451 | 1..152 | 97 | -> | Plus |
| 3R | 19781511..19782022 | 153..665 | 99 | -> | Plus |
| 3R | 19782075..19782221 | 666..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:22 Download gff for
MXO03871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15607021..15607173 | 1..152 | 97 | -> | Plus |
| arm_3R | 15607233..15607744 | 153..665 | 99 | -> | Plus |
| arm_3R | 15607797..15607943 | 666..812 | 100 | | Plus |
