MXO03873.5prime Sequence
880 bp (709 high quality bases) assembled on 2007-07-18
> MXO03873.5prime
CAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCATACTTGTG
GTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATCCTGGCCTT
TTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGACAGCTTAG
TGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCGATCTCTTA
GGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTGGCGAAGAA
CAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAACTTCAATG
TTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTAATCTGATA
ACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGAACTGGCGT
TCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTATGCTCACTA
GGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCTTTATAGCG
GAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAAGTTGTGGT
TTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCATTTGTGAAA
CTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCGATCGCTAC
AGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGCATAGTAAA
CCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGGACACAAGT
ACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGATAATCGCA
AAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAAAAGAGCCACTCA
AACGGCTGACGATGATATATGCGTGAATAA
MXO03873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1944-PA | 1563 | Cyp4p2-RA | 1..868 | 9..876 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4p2-RA | 1777 | CG1944-RA | 39..908 | 7..876 | 4335 | 99.9 | Plus |
| Cyp4p3-RA | 1667 | CG10843-RA | 315..687 | 289..661 | 345 | 74.3 | Plus |
| Cyp4p1-RA | 1680 | CG10842-RA | 358..688 | 331..661 | 305 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9238489..9238760 | 597..868 | 1345 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9237550..9237756 | 7..213 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 9237836..9238037 | 213..414 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 9238331..9238431 | 497..597 | 505 | 100 | Plus |
| 2R | 25286936 | 2R | 9238089..9238173 | 412..496 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 9240609..9240684 | 420..495 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:50 has no hits.
MXO03873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:09 Download gff for
MXO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1944-PA | 1..869 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:33 Download gff for
MXO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4p2-RA | 34..911 | 1..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:23 Download gff for
MXO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4p2-RA | 34..911 | 1..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:23 Download gff for
MXO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9238490..9238763 | 598..871 | 99 | | Plus |
| 2R | 9238092..9238173 | 415..496 | 100 | -> | Plus |
| 2R | 9238331..9238431 | 497..597 | 100 | -> | Plus |
| 2R | 9237545..9237756 | 1..213 | 98 | -> | Plus |
| 2R | 9237837..9238037 | 214..414 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:33 Download gff for
MXO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5125050..5125261 | 1..213 | 98 | -> | Plus |
| arm_2R | 5125342..5125542 | 214..414 | 100 | -> | Plus |
| arm_2R | 5125597..5125678 | 415..496 | 100 | -> | Plus |
| arm_2R | 5125836..5125936 | 497..597 | 100 | -> | Plus |
| arm_2R | 5125995..5126268 | 598..871 | 99 | | Plus |
