MXO03875.5prime Sequence
693 bp (636 high quality bases) assembled on 2007-07-18
> MXO03875.5prime
CAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAATCCATCGCA
AGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTTTCACCCGA
AAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTCGCCATCGT
CCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTCCCGTTCAG
ATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCGCACAACAC
CATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGATGTGGATC
GTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTGCCGCCGCC
GCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTGGAGCCGCA
TCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAGCAGTCGCA
GTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATAATAACAAC
AACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGCGTAGGCGT
TGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCACCACCACCA
CGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATTCCAAGAGT
CCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGATG
MXO03875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8991-PA | 2442 | CG8991-RA | 1..685 | 9..693 | 3425 | 100 | Plus |
| CG32133-PA | 6885 | CG32133-RA | 711..758 | 472..519 | 165 | 93.7 | Plus |
| CG32133-PA | 6885 | CG32133-RA | 714..761 | 472..519 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 191..876 | 8..693 | 3430 | 100 | Plus |
| Sobp-RA | 3104 | CG8991-RA | 472..1157 | 8..693 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11829977..11830438 | 693..232 | 2310 | 100 | Minus |
| 2R | 25286936 | 2R | 11837895..11838038 | 234..91 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 11839272..11839354 | 90..8 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:44 has no hits.
MXO03875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:14 Download gff for
MXO03875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8991-PA | 1..685 | 9..693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:29 Download gff for
MXO03875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 186..876 | 1..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:14 Download gff for
MXO03875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 467..1157 | 1..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:14 Download gff for
MXO03875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11829977..11830436 | 234..693 | 100 | <- | Minus |
| 2R | 11837896..11838038 | 91..233 | 100 | <- | Minus |
| 2R | 11839272..11839359 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:29 Download gff for
MXO03875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7717482..7717941 | 234..693 | 100 | <- | Minus |
| arm_2R | 7725401..7725543 | 91..233 | 100 | <- | Minus |
| arm_2R | 7726777..7726864 | 1..90 | 96 | | Minus |
