MXO03876.5prime Sequence
875 bp (724 high quality bases) assembled on 2007-07-18
> MXO03876.5prime
CAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCCTGGCCCTA
ATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATCCGAAGACA
GGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAAGGTGATGG
CCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCAAAGAAACC
TCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTGGAGACCCG
CAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAGCTCTCTGG
GTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGGACTGCAAT
CCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTCTCGGCGCC
CGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCACTGATTGCT
TGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACTACGAGACC
GGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCGGGTGCCCT
GACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAAATCATGCC
TGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTGTTCAGAAC
TACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCGTCAAGACG
CGAGTGCTTTGAACTCTGCCTCGGCGAAAACGACTTCACATGCAGATCTG
CCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAACTGGATCGC
CTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGGTCNGATTA
CCTTGAAAATCACTGTGTCGATGAA
MXO03876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7802-PA | 2235 | CG7802-RA | 1..867 | 9..875 | 4316 | 99.8 | Plus |
| CG7802-PB | 2235 | CG7802-RB | 1..867 | 9..875 | 4316 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neo-RB | 3005 | CG7802-RB | 201..1067 | 9..875 | 4324 | 99.9 | Plus |
| neo-RA | 2977 | CG7802-RA | 173..1039 | 9..875 | 4324 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29822381..29822754 | 9..382 | 1870 | 100 | Plus |
| 3R | 32079331 | 3R | 29823039..29823241 | 543..745 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 29822819..29822982 | 382..545 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29823373..29823504 | 744..875 | 649 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:37 has no hits.
MXO03876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:19 Download gff for
MXO03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7802-PB | 1..865 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:59 Download gff for
MXO03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1039 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:09 Download gff for
MXO03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1039 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:09 Download gff for
MXO03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29822381..29822754 | 9..382 | 100 | -> | Plus |
| 3R | 29822820..29822980 | 383..543 | 100 | -> | Plus |
| 3R | 29823040..29823241 | 544..745 | 100 | -> | Plus |
| 3R | 29823375..29823504 | 746..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:59 Download gff for
MXO03876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25648103..25648476 | 9..382 | 100 | -> | Plus |
| arm_3R | 25648542..25648702 | 383..543 | 100 | -> | Plus |
| arm_3R | 25648762..25648963 | 544..745 | 100 | -> | Plus |
| arm_3R | 25649097..25649226 | 746..875 | 99 | | Plus |
