Clone MXO03877 Report

Search the DGRC for MXO03877

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:38
Well:77
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptnAcRalpha-96Ab-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03877.5prime Sequence

716 bp (681 high quality bases) assembled on 2007-07-18

> MXO03877.5prime
CAGTCGACATGGCTCCTGTATGCTGCNCCNCNCNNCCCCGCCCCNTCGCC
CTGCTCGCTCNCTTCTGGCGCCNCTGCNNGCTAGTCTGCCTGCTCCTGGT
GCTCCTGCTCCTCTGCAAAACCNTTCANGCAAATCCCNATGCCNANCTAC
TCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCCCTGTGAGC
AATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTCTCCCAACT
CATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGTGTGGCTGG
AGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGGAGTATGGC
GGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTGCCCGACAT
CGTGCTCTACAACAATGCCAATGGCGAGTACGTGGTCACCACCATGACGA
AGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGCCGGCCATC
TTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTCGATCAGCA
GACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGATCAGATCG
ATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGGTGGAGATA
GGCATCAACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGACATTCTCGG
CGTTCCGGCTGAGCGG

MXO03877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6844-PA 1731 nAcRalpha-96Ab-RA 77..708 85..716 2940 98.4 Plus
CG6844-PB 1731 nAcRalpha-96Ab-RB 77..708 85..716 2940 98.4 Plus
CG11348-PA 1566 nAcRbeta-64B-RA 471..523 530..582 165 92.4 Plus
CG5610-PA 1704 nAcRalpha-96Aa-RA 81..122 149..190 135 92.8 Plus
CG2302-PA 2352 nAcRalpha-7E-RA 466..507 531..572 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 453..1161 8..716 3230 96.5 Plus
nAChRalpha2-RA 2387 CG6844-RA 521..1229 8..716 3230 96.5 Plus
nAChRalpha1-RC 11027 CG5610-RC 1561..2002 149..590 590 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24485948..24486200 8..260 980 90.9 Plus
3R 32079331 3R 24487423..24487603 416..596 890 99.4 Plus
3R 32079331 3R 24487130..24487285 260..415 780 100 Plus
3R 32079331 3R 24488449..24488571 594..716 600 99.2 Plus
3R 32079331 3R 24407324..24407443 590..471 270 81.7 Minus
X 23542271 X 8307006..8307182 415..239 240 75.7 Minus
3L 28110227 3L 4433721..4433795 522..596 225 86.7 Plus
3R 32079331 3R 24421743..24421806 212..149 185 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:13:59 has no hits.

MXO03877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:24 Download gff for MXO03877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PB 20..708 28..716 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:32 Download gff for MXO03877.5prime
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 541..1229 28..716 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:43 Download gff for MXO03877.5prime
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 541..1229 28..716 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:43 Download gff for MXO03877.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24487423..24487603 416..596 99 -> Plus
3R 24488452..24488571 597..716 99   Plus
3R 24485968..24486200 28..260 91 -> Plus
3R 24487131..24487285 261..415 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:32 Download gff for MXO03877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20311690..20311922 28..260 91 -> Plus
arm_3R 20312853..20313007 261..415 100 -> Plus
arm_3R 20313145..20313325 416..596 99 -> Plus
arm_3R 20314174..20314293 597..716 99   Plus