MXO03877.5prime Sequence
716 bp (681 high quality bases) assembled on 2007-07-18
> MXO03877.5prime
CAGTCGACATGGCTCCTGTATGCTGCNCCNCNCNNCCCCGCCCCNTCGCC
CTGCTCGCTCNCTTCTGGCGCCNCTGCNNGCTAGTCTGCCTGCTCCTGGT
GCTCCTGCTCCTCTGCAAAACCNTTCANGCAAATCCCNATGCCNANCTAC
TCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCCCTGTGAGC
AATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTCTCCCAACT
CATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGTGTGGCTGG
AGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGGAGTATGGC
GGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTGCCCGACAT
CGTGCTCTACAACAATGCCAATGGCGAGTACGTGGTCACCACCATGACGA
AGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGCCGGCCATC
TTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTCGATCAGCA
GACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGATCAGATCG
ATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGGTGGAGATA
GGCATCAACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGACATTCTCGG
CGTTCCGGCTGAGCGG
MXO03877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6844-PA | 1731 | nAcRalpha-96Ab-RA | 77..708 | 85..716 | 2940 | 98.4 | Plus |
CG6844-PB | 1731 | nAcRalpha-96Ab-RB | 77..708 | 85..716 | 2940 | 98.4 | Plus |
CG11348-PA | 1566 | nAcRbeta-64B-RA | 471..523 | 530..582 | 165 | 92.4 | Plus |
CG5610-PA | 1704 | nAcRalpha-96Aa-RA | 81..122 | 149..190 | 135 | 92.8 | Plus |
CG2302-PA | 2352 | nAcRalpha-7E-RA | 466..507 | 531..572 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nAChRalpha2-RB | 2319 | CG6844-RB | 453..1161 | 8..716 | 3230 | 96.5 | Plus |
nAChRalpha2-RA | 2387 | CG6844-RA | 521..1229 | 8..716 | 3230 | 96.5 | Plus |
nAChRalpha1-RC | 11027 | CG5610-RC | 1561..2002 | 149..590 | 590 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24485948..24486200 | 8..260 | 980 | 90.9 | Plus |
3R | 32079331 | 3R | 24487423..24487603 | 416..596 | 890 | 99.4 | Plus |
3R | 32079331 | 3R | 24487130..24487285 | 260..415 | 780 | 100 | Plus |
3R | 32079331 | 3R | 24488449..24488571 | 594..716 | 600 | 99.2 | Plus |
3R | 32079331 | 3R | 24407324..24407443 | 590..471 | 270 | 81.7 | Minus |
X | 23542271 | X | 8307006..8307182 | 415..239 | 240 | 75.7 | Minus |
3L | 28110227 | 3L | 4433721..4433795 | 522..596 | 225 | 86.7 | Plus |
3R | 32079331 | 3R | 24421743..24421806 | 212..149 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:59 has no hits.
MXO03877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:24 Download gff for
MXO03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6844-PB | 20..708 | 28..716 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:32 Download gff for
MXO03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAcRalpha-96Ab-RA | 541..1229 | 28..716 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:43 Download gff for
MXO03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nAChRalpha2-RA | 541..1229 | 28..716 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:43 Download gff for
MXO03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24487423..24487603 | 416..596 | 99 | -> | Plus |
3R | 24488452..24488571 | 597..716 | 99 | | Plus |
3R | 24485968..24486200 | 28..260 | 91 | -> | Plus |
3R | 24487131..24487285 | 261..415 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:32 Download gff for
MXO03877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20311690..20311922 | 28..260 | 91 | -> | Plus |
arm_3R | 20312853..20313007 | 261..415 | 100 | -> | Plus |
arm_3R | 20313145..20313325 | 416..596 | 99 | -> | Plus |
arm_3R | 20314174..20314293 | 597..716 | 99 | | Plus |