MXO03878.5prime Sequence
839 bp (794 high quality bases) assembled on 2007-07-18
> MXO03878.5prime
CAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGACGCCCACG
CCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAAACATGGAG
CGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGTCGATTTAG
CAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCGGTGGCGCT
TTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATTCCTCTGTT
CTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGCCATAACCT
GCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATGCCGTGGTG
CTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATTGCCTGGTC
GTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTGGACGTCGT
GTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGAGCCAAAAT
GCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTATGCCATGGG
AAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTCGAGCTTGG
ATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAGCATCGGAA
TATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGAATCCATGA
CTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGATTGTCTACT
TAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGGGCAAGGGT
GTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTG
MXO03878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8380-PA | 1896 | DAT-RA | 1..831 | 9..839 | 4130 | 99.8 | Plus |
| CG1732-PB | 1527 | CG1732-RB | 237..275 | 152..190 | 145 | 94.8 | Plus |
| CG1732-PA | 1911 | CG1732-RA | 237..275 | 152..190 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DAT-RB | 3040 | CG8380-RB | 324..1154 | 9..839 | 4140 | 99.9 | Plus |
| DAT-RA | 3040 | CG8380-RA | 324..1154 | 9..839 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16563770..16563957 | 196..9 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 16560571..16560751 | 839..659 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 16560809..16560982 | 658..485 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 16561043..16561199 | 485..329 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16561261..16561397 | 331..195 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:39 has no hits.
MXO03878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:29 Download gff for
MXO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8380-PA | 1..831 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:22 Download gff for
MXO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 315..1154 | 1..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:06 Download gff for
MXO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 315..1154 | 1..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:06 Download gff for
MXO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16561043..16561197 | 331..485 | 100 | <- | Minus |
| 2R | 16561262..16561396 | 196..330 | 100 | <- | Minus |
| 2R | 16563771..16563965 | 1..195 | 98 | | Minus |
| 2R | 16560571..16560751 | 659..839 | 99 | <- | Minus |
| 2R | 16560809..16560981 | 486..658 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:22 Download gff for
MXO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12448548..12448702 | 331..485 | 100 | <- | Minus |
| arm_2R | 12448767..12448901 | 196..330 | 100 | <- | Minus |
| arm_2R | 12451276..12451470 | 1..195 | 98 | | Minus |
| arm_2R | 12448076..12448256 | 659..839 | 99 | <- | Minus |
| arm_2R | 12448314..12448486 | 486..658 | 100 | <- | Minus |
