MXO03880.5prime Sequence
801 bp (576 high quality bases) assembled on 2007-07-18
> MXO03880.5prime
CAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCACGCGCGAG
AAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGACTCCACTTC
CACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGTGGAACGTGGGATTGGCGGGC
GCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCG
ACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGCCGATCCG
TGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCTTAACTTG
AAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCAACTCGGA
T
MXO03880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1193-PA | 1818 | CG1193-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG1193-PB | 2010 | CG1193-RB | 314..763 | 130..579 | 2250 | 100 | Plus |
| CG1193-PA | 1818 | CG1193-RA | 572..792 | 581..801 | 1105 | 100 | Plus |
| CG1193-PB | 2010 | CG1193-RB | 764..984 | 581..801 | 1105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RF | 2172 | CG1193-RF | 139..930 | 9..801 | 3940 | 99.9 | Plus |
| kat-60L1-RA | 2301 | CG1193-RA | 139..930 | 9..801 | 3940 | 99.9 | Plus |
| kat-60L1-RH | 2313 | CG1193-RH | 139..942 | 9..801 | 3810 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5785440..5785842 | 398..801 | 1970 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5785112..5785381 | 130..399 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 5781900..5782021 | 9..130 | 610 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3337 | 489..586 | 121 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2361 | 524..557 | 107 | 79.4 | Plus |
MXO03880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:39 Download gff for
MXO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1193-PA | 1..792 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:06 Download gff for
MXO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RA | 132..930 | 1..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:59 Download gff for
MXO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RA | 132..930 | 1..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:59 Download gff for
MXO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5781893..5782021 | 1..130 | 96 | -> | Plus |
| 3R | 5785113..5785381 | 131..399 | 100 | -> | Plus |
| 3R | 5785442..5785842 | 400..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:06 Download gff for
MXO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1607615..1607743 | 1..130 | 96 | -> | Plus |
| arm_3R | 1610835..1611103 | 131..399 | 100 | -> | Plus |
| arm_3R | 1611164..1611564 | 400..801 | 99 | | Plus |
