MXO03881.5prime Sequence
846 bp (814 high quality bases) assembled on 2007-07-18
> MXO03881.5prime
CAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCCTTCTTGTC
GTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGACACGGGCAA
TGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGCGCAATTGG
ATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAATATGATTTC
ATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCGCGACTCTC
CGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGGTCCCGAGA
ACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGCTGGGCGAA
ATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGCCTGGCCAT
GAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGGTGGCAGCT
CGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCGACTACGAT
CGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAGGTACTACC
CTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGATGAGAATC
TGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGACGAGGACT
CGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGATTGCCGCG
AGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCTGCAGGCGA
ATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATCTGTATCCC
ATTAAGGGAAAGCGTCGAAATCTTCATGTGAAGAAAAATGCCCTGG
MXO03881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-PA | 1869 | CG9519-RA | 1..834 | 9..842 | 4145 | 99.8 | Plus |
| CG9521-PA | 1866 | CG9521-RA | 376..493 | 390..507 | 490 | 96.6 | Plus |
| CG9521-PA | 1866 | CG9521-RA | 208..285 | 222..299 | 240 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 58..896 | 8..846 | 4165 | 99.8 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 325..767 | 192..634 | 1105 | 84.1 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 405..538 | 235 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14855466..14856304 | 846..8 | 4165 | 99.8 | Minus |
| X | 23542271 | X | 14852503..14852945 | 634..192 | 1090 | 83.1 | Minus |
| X | 23542271 | X | 14865481..14865614 | 538..405 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:05 has no hits.
MXO03881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:44 Download gff for
MXO03881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-PA | 1..838 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:34 Download gff for
MXO03881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 52..896 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:46 Download gff for
MXO03881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 52..896 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:46 Download gff for
MXO03881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14855466..14856307 | 1..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:34 Download gff for
MXO03881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14749499..14750340 | 1..846 | 99 | | Minus |
