MXO03883.5prime Sequence
867 bp (804 high quality bases) assembled on 2007-07-18
> MXO03883.5prime
CAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGCTGTGCGGG
GTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTCACCGGCGG
CCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGAACTGTATA
ATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCTGGACGGAT
CGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCACCAATAGA
GGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGACAGGCACCC
TCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAAATCTAGAT
AGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTGTCGGTATA
CACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATATCTACGGCG
GCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACTACCTTCTG
GAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGAGCCCTCGG
CTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCCCATAGCCG
ATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTAGCTTTGGC
GGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGCGCTGGAGT
AGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATATGTTCAAGA
GAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAATCAACAAG
GATCCGAAAGCACAATCTAGACGTATCTGTATTCAGTTGGGATGTTCTGG
CTGTGAGCAACACGATC
MXO03883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7529-PA | 1680 | CG7529-RA | 1..859 | 9..867 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 45..903 | 9..867 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21502464..21502920 | 411..867 | 2270 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21501465..21501722 | 9..266 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 21502165..21502309 | 266..410 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:52 has no hits.
MXO03883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:53 Download gff for
MXO03883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-PA | 1..859 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:35 Download gff for
MXO03883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..903 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:47 Download gff for
MXO03883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..903 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:47 Download gff for
MXO03883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21501457..21501722 | 1..266 | 98 | -> | Plus |
| 3L | 21502166..21502309 | 267..410 | 100 | -> | Plus |
| 3L | 21502464..21502920 | 411..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:35 Download gff for
MXO03883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21494557..21494822 | 1..266 | 98 | -> | Plus |
| arm_3L | 21495266..21495409 | 267..410 | 100 | -> | Plus |
| arm_3L | 21495564..21496020 | 411..867 | 99 | | Plus |
