MXO03885.5prime Sequence
867 bp (726 high quality bases) assembled on 2007-07-18
> MXO03885.5prime
CAGTCGACATGTATAGCCTCAAGGAGGGGCTCCGGGCTCTTAACAGTCGA
ACGAGACCAGCTCTCATTTGCCGGCGCAACATTTCGGAGGAGGCTCCCAA
ACAGGATAGTCCGTTTAAATGGAGAAAACCAATTGGCCAGCACACAGGAA
TCAATATATACAATCACGGCTTGCGGCAGAAGGTACCCCTAATCCTACGC
AATCCCCAAATGGTCACATGGTACACTTGCGGACCCACTGTTTATGACTC
CGCGCACCTAGGTCATGCCAGCACCTATGTCAAGGTAGACATCCTGCAGC
GCATTCTCCGCGATTATTTTAAAATCAACCTGGTGACAGCCATGAACATC
ACGGATGTTGACGACAAGATCATTAAGCGGGCCCAGCTCGCTGGACTGGA
CTGGCAGAAGATGGCGCGAGCTTATGAAGCGGAATTTCGTCAGGACATGT
TGCGTCTCAATGTTCAGGCGCCGGATGTGCGCAGTCATGTGACTACCACC
ATGCCTGTCATTATTCAGTTCATTCAGCAGCTGATAGACGGAAAGCAGGC
TTACGTTACCCCGGATAACTCTGNTTTACTTTNGATGTCTCCAAAAGCAA
GAACTATNGGAAAGCTTCAAAACTTAGGCCTAAGCGAGGACAAATTGGAC
CCCATCAAACGAAACACTGCCGATTTTGCCTTGTGGAAGGCGCGTAAAAG
TGGCAGTGAGCCCACGTGGGCTGCACCCTGGGGTGGCGAGGGACGCCCCG
GTTGGCACATTGAATGCAGCGCCATTGCAGGTTTATTCTTTGGCCGCCAG
TTGGACATTCATGCTGGCGGCTTGGACTTGCGTTTTCCGCACCACGAAAA
CGAGGAGGCGCAGTGCT
MXO03885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8257-PA | 1677 | CG8257-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG8257-PA | 1677 | CG8257-RA | 598..856 | 609..867 | 1295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8257-RB | 2108 | CG8257-RB | 102..957 | 9..867 | 4220 | 99.7 | Plus |
| CG8257-RA | 1813 | CG8257-RA | 102..957 | 9..867 | 4220 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14160247..14161091 | 867..20 | 4090 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:05 has no hits.
MXO03885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:01 Download gff for
MXO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8257-PA | 1..856 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:40 Download gff for
MXO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8257-RA | 102..957 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:54 Download gff for
MXO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8257-RA | 102..957 | 9..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:54 Download gff for
MXO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14160247..14161091 | 20..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:40 Download gff for
MXO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10047752..10048596 | 20..867 | 99 | | Minus |
