MXO03886.5prime Sequence
849 bp (772 high quality bases) assembled on 2007-07-18
> MXO03886.5prime
CAGTCGACATGGCTAAGAAAATACCTTTTAACGTGGTGTTCGCCTCAGAC
GAGGATGTTAACTTTCCGGCTAGCGAGTTAAACAATCACGGCCCCACAGT
TCACGGATGGCGAAGTGCTCCGAACGGCAGCCTCACCTCACATGACATCA
TCCTCCGATTCCAGCAGCCGGCCAAGATCTATCGCATCCAGCTCCTGGCA
CACCAGTATCTTATACCTGAGAAAGTAGAACTCTGGCTGCACTACTCGCC
CAAATCCCTGCCCAGCACTCCATCCTCGCAGTACTTTGACTTTTTGGGTT
TTGTTGCCCTGGCGGATAATGCCAACACGAACTACAAGTCTCGGGAGCTG
CAGAGCGTAACCGTGTGTCCACGTAGGGGCACACATCTTAAGCTGCGTCT
GATTGGCGTCCAAGGAAACGACTACAATGACACAGGCCAGATTTCCCTAC
TAGCGGTAAATGTCCTGGGCGAGGATCTGGAAGTGGGGCCAAATAATGGC
AACGGAGAGGAGCACTTGGCCAACGAGGCCCCACCGTTGGACACGGCCAC
CGGAGAACTGGCCCTGGCCTCCGTCTGTGATGACCTGCTTTTCTCCATGT
ATGTGGAGGAGTCAATAGTGCAGACCATCCGAGAGTTGGAACAGCGAAAG
ATTTTGGCCGTTAACTCAGAAAGATTCGAGTACGCCCGCAAACTGAAGCT
ATGCATGACAGCTTTAAGGACTGCCGGAGAACGTTTGGGGCGCTATGCTC
TGGCCAAGAGGCAGGCTGTTCAGCAGGAGGACTTTACCACGGCCAGGCTA
CGCAAGGAGCAGATCGAGATGTACCGGGCGGCAGTACTTCGACAATTGC
MXO03886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10137-PA | 2826 | CG10137-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10137-RA | 3227 | CG10137-RA | 81..927 | 3..849 | 4220 | 99.9 | Plus |
| CG10165-RD | 1440 | CG10165-RD | 366..537 | 216..45 | 860 | 100 | Minus |
| CG10165-RB | 1342 | CG10165-RB | 268..439 | 216..45 | 860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19529094..19529726 | 217..849 | 3165 | 100 | Plus |
| 2L | 23513712 | 2L | 19528774..19528945 | 45..216 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 19526766..19526811 | 3..48 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:49 has no hits.
MXO03886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:06 Download gff for
MXO03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-PA | 1..841 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:28 Download gff for
MXO03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 80..927 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:10 Download gff for
MXO03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 80..927 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:10 Download gff for
MXO03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19526765..19526811 | 1..48 | 95 | -> | Plus |
| 2L | 19528778..19528945 | 49..216 | 100 | -> | Plus |
| 2L | 19529094..19529726 | 217..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:28 Download gff for
MXO03886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19526765..19526811 | 1..48 | 95 | -> | Plus |
| arm_2L | 19528778..19528945 | 49..216 | 100 | -> | Plus |
| arm_2L | 19529094..19529726 | 217..849 | 100 | | Plus |
