MXO03887.5prime Sequence
883 bp (566 high quality bases) assembled on 2007-07-18
> MXO03887.5prime
CAGTCGACATGTGCGACGGTGAAATTGGCGATCCGGTGACTCAGCCACGT
TCCGAGGGCGGTGGATTGGTCACAATGGATCAGGAGACCCGGACGCACTA
CCTCGACGCGGCGACAGATAAGCACCTGACCAATGGATCGCCAGATCCAG
AGCCCGTGGATCCGCTACTCGTGGCCCAGTGGTCCATCGAGAATGTGACC
AGTTGGGCCACCTGCATGGAGCACTTTTCGAGAACACTGCTCGACTGCCT
GCGCCAGGAGGCCATCGACGGCGAGGTGCTGCTCTCCCTCACCGAGGAGG
ATGTACGTGATATGCGCTACAAACTGGGCTACAAACTCACCTTCGGCGAG
CTCAAGAAATTCTGGATAGCCGTGCTCAAGCTGCAGCTACTGGTGAAGAA
CAGCTCTGCGGAATCCGTAATACTGGGCATCGAGTGCCATGGGAACGGGA
ACTCGGTATACATGCCACTAGCCAGCACCGGCTGCGGTCCACCGTCCTCA
TCCACGTGCCCCTGTCCGCAGGCCGAATGCCCCAGCTATGTGTCCGATTG
CGATACCTATTTGCGCATGGGGCGGACGCTATGTTCCGCCGGAATACTTC
AAGACCGCCATGAGCTTAAGCTACTCGTTCGTTGTCACCTGGATAACATC
GTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAGCGCTATC
CGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCCGTGGGCC
TTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTTGGGTGGT
CGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGCGATTCTTTG
CTCTGGCGGGCACGGTTTTTCTGCTGCGCTGCG
MXO03887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32380-PA | 1803 | SMSr-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG32380-PA | 1803 | SMSr-RA | 561..874 | 570..883 | 1520 | 99.3 | Plus |
| CG32380-PB | 1155 | SMSr-RB | 1..226 | 658..883 | 1105 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..1118 | 9..883 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380622..7381230 | 618..9 | 3000 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7375645..7375908 | 883..620 | 1305 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:33 has no hits.
MXO03887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:10 Download gff for
MXO03887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32380-PA | 1..874 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:11 Download gff for
MXO03887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 238..1118 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:03 Download gff for
MXO03887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 238..1118 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:03 Download gff for
MXO03887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375645..7375908 | 620..883 | 99 | <- | Minus |
| 3L | 7380621..7381234 | 1..619 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:11 Download gff for
MXO03887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7368745..7369008 | 620..883 | 99 | <- | Minus |
| arm_3L | 7373721..7374334 | 1..619 | 99 | | Minus |
