MXO03888.5prime Sequence
795 bp (768 high quality bases) assembled on 2007-07-18
> MXO03888.5prime
CAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGTTGGCAGAC
TTGCTGGATAATGAAAGAGAGGACGACGAGCCGCATTTTCTGCAGCAGTT
GAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGATCAAGTCC
TGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAAATGAAGAG
CTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTCATAGATCT
AAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTCCCACAGGA
AGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTCGCGAAATG
TTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCGTTTAAGGA
GTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAATGAGCTATG
GAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGCGGATACCA
CCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTATGAAAATCT
TTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTTCATTCTCA
CATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCTCAACGGAA
TCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGACAGATCCT
CAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAGGCTCAAGG
AGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGCGCT
MXO03888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3239-PA | 1683 | CG3239-RA | 1..787 | 9..795 | 3910 | 99.8 | Plus |
| CG3239-PB | 1515 | CG3239-RB | 1..619 | 177..795 | 3095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..947 | 9..795 | 3920 | 99.9 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..947 | 9..795 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5495042..5495772 | 795..65 | 3640 | 99.9 | Minus |
| X | 23542271 | X | 5495837..5495892 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:45 has no hits.
MXO03888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:16 Download gff for
MXO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 1..787 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:02 Download gff for
MXO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 133..925 | 2..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:36 Download gff for
MXO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 155..947 | 2..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:36 Download gff for
MXO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5495042..5495772 | 65..795 | 99 | <- | Minus |
| X | 5495837..5495898 | 2..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:02 Download gff for
MXO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5389075..5389805 | 65..795 | 99 | <- | Minus |
| arm_X | 5389870..5389931 | 2..64 | 93 | | Minus |
