MXO03889.5prime Sequence
880 bp (826 high quality bases) assembled on 2007-07-18
> MXO03889.5prime
CAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATAACCATTCC
GGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGATCGCCCCCA
AAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAAATCCACGC
TGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGGAGGCACCT
GGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCACGTGAACGA
GATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAGTGTGCCTA
AAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACTGGCGGAAA
GAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATAGCCAATCT
GGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGAGATTGATG
TGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGATGATAAAA
CAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAGCAGCAGGC
TAAGCCGAAGGTCCAGGAGGAAGGCCATCTTTGGAAAATAAGGATGCCGG
CTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAGAGGAG
AAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGACAAACG
CTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAACCAATT
TGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACTTACGA
CCATCGCANGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAAACCAC
CCAGAAGTTCTCCGTCAAGCGTCGTACACC
MXO03889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6745-PA | 2205 | CG6745-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG6745-PA | 2205 | CG6745-RA | 587..869 | 598..880 | 1396 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6745-RA | 2770 | CG6745-RA | 83..951 | 9..880 | 4274 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8510512..8510886 | 315..692 | 1760 | 98.9 | Plus |
| 3L | 28110227 | 3L | 8510258..8510451 | 122..315 | 955 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8510085..8510203 | 9..127 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 8510939..8511042 | 690..793 | 520 | 100 | Plus |
| 3L | 28110227 | 3L | 8511102..8511188 | 794..880 | 424 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:22 has no hits.
MXO03889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:20 Download gff for
MXO03889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-PA | 1..869 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:30 Download gff for
MXO03889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..951 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:03 Download gff for
MXO03889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..951 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:03 Download gff for
MXO03889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8510085..8510203 | 9..127 | 100 | -> | Plus |
| 3L | 8510264..8510451 | 128..315 | 100 | -> | Plus |
| 3L | 8510513..8510884 | 316..690 | 99 | -> | Plus |
| 3L | 8510940..8511042 | 691..793 | 100 | -> | Plus |
| 3L | 8511102..8511188 | 794..880 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:30 Download gff for
MXO03889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8503364..8503551 | 128..315 | 100 | -> | Plus |
| arm_3L | 8503185..8503303 | 9..127 | 100 | -> | Plus |
| arm_3L | 8503613..8503984 | 316..690 | 99 | -> | Plus |
| arm_3L | 8504040..8504142 | 691..793 | 100 | -> | Plus |
| arm_3L | 8504202..8504288 | 794..880 | 98 | | Plus |
