MXO03891.5prime Sequence
812 bp (799 high quality bases) assembled on 2007-07-18
> MXO03891.5prime
CAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATGAGAATTTG
CGCAAGATTCGCAATCGCCTGATGCAATGGGAGGGCAAAACGGACCCGCT
GGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCTGACCAATC
TGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGCCCACCCAG
GTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGCGGCGATGA
CATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTTTCTGCTTT
GGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATGCCGACTAC
CACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGCTCCCACAT
GCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCTCTGCGACG
AGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGGCCAGCGAG
CAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCACGAGATTCA
ACGCCGTCTGCACTACNTTCAGCCAGGTGGAGTTGCTCAACCAACGACTT
CAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGTGCCTCAA
CAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAATTCAAGG
ATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAAAGCCTCG
GGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAACCGAGGC
CACGCTCCATCC
MXO03891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3248-PA | 2718 | CG3248-RA | 1..558 | 9..566 | 2740 | 99.6 | Plus |
| CG3248-PA | 2718 | CG3248-RA | 559..803 | 568..812 | 1225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 30..832 | 9..812 | 3965 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3456302..3456815 | 687..173 | 2525 | 99.8 | Minus |
| 2L | 23513712 | 2L | 3456870..3457035 | 174..9 | 800 | 98.8 | Minus |
| 2L | 23513712 | 2L | 3456120..3456244 | 812..688 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:53 has no hits.
MXO03891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:29 Download gff for
MXO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3248-PA | 1..803 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:07 Download gff for
MXO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..832 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:41 Download gff for
MXO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..832 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:41 Download gff for
MXO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3456120..3456244 | 688..812 | 100 | <- | Minus |
| 2L | 3456302..3456814 | 174..687 | 99 | <- | Minus |
| 2L | 3456871..3457042 | 1..173 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:07 Download gff for
MXO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3456120..3456244 | 688..812 | 100 | <- | Minus |
| arm_2L | 3456302..3456814 | 174..687 | 99 | <- | Minus |
| arm_2L | 3456871..3457042 | 1..173 | 96 | | Minus |
