MXO03894.5prime Sequence
875 bp (806 high quality bases) assembled on 2007-07-18
> MXO03894.5prime
CAGTCGACATGCTGGATAAGCCAGCCCCAGTGGGGGCCTCATGGTACACC
AATCTGTCCGACTTCCAGGTGCAGGCCGTCGAGGCACTGGCCTTCTCGAT
TCGGGATGACAATGCGGAGGGTACTGTGTACCGCACCCAGTTCTGTCTCA
GTCGCTTGGGAGTCACGCCCATGGTAAAGACCCGGATGTTGCGGAAGCTA
ATTGGGATTTGTCGCGGCAGCGACTTGGCATTCCTTTACTTTCTGATGGA
GGCCTGCTATAAGGGCACAGGATCTGCGTACAGTGAACGGATCCTGATGT
CCGCCATCACCTTTTTGGATCTGGAGATGACCATGAGGGAACTGGACAAA
ATACTGCCGCCGGGAGTGGAACGGCTGAATAAGAAAGAGTCGATAGCTCC
GCCAGTGGATTATCGCTCCATGTCGTTGCCAACACCTTTACCGACCAAAC
GGGAATCGGATCTCCGAAAGGTCCGCTCGCCCTACTTTACCCCGTTGCCC
AAACCAAAGCTACCCAAGGGTGGCGAGAAGTTCACTGCCAAGAGACCCTG
CCTCGTGGTCTCCTTTCCATTCTNGGCCCGCTGGCGAGAGGCCCAACTAC
AAGGTGAACGAGGAGAACCGCTGGTTCGCCGCTTACAGGTTCCAGCCGGT
GAAGCGGATGCTCTTCAAGATGGTCGGCGACATCATGACCGACTACTGGA
CAAAGATAGATGGTACTCAACCGGCGGAGAACGAAGCGATGCCCATGTGC
GAGTTCCACAAGGAGGCACTGCGGCAGGAGCAGCTGGTGAAGGATGCAGC
TGTGGTCAGGGCCACAAACAGTGCTTGGCTCTCGTGGATATCACTTCACG
GCAGGATGCCCTCCTTAAAAACGTA
MXO03894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14735-PA | 2136 | CG14735-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG14735-PA | 2136 | CG14735-RA | 566..799 | 575..808 | 1170 | 100 | Plus |
| CG14735-PA | 2136 | CG14735-RA | 804..860 | 812..868 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 123..991 | 8..875 | 4260 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12033264..12034124 | 8..868 | 4195 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:40 has no hits.
MXO03894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:43 Download gff for
MXO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1..867 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:15 Download gff for
MXO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 115..990 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:43 Download gff for
MXO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 115..990 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:43 Download gff for
MXO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12033256..12034131 | 1..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:15 Download gff for
MXO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7858978..7859853 | 1..874 | 99 | | Plus |
