MXO03896.5prime Sequence
589 bp (589 high quality bases) assembled on 2007-07-18
> MXO03896.5prime
CAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTGCCGCCGAG
GCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCCCAGGAGAG
CCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACACATCCGGCG
ACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCCTGTGCAAG
CTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAACGAGAGCAA
AATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGCGTGCGCCA
AGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCGACCTGTGG
GAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCGCTGGGTCG
CAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGAGGCCGACA
AGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCGCCAACGTC
ATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCGGGCATCAA
CTTCGGCAACACCCGGCACATGGACAAGCTTTCTAGACC
MXO03896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14996-PB | 567 | Chd64-RB | 1..564 | 9..572 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chd64-RB | 1429 | CG14996-RB | 180..743 | 9..572 | 2820 | 100 | Plus |
| Chd64-RC | 1226 | CG14996-RC | 27..540 | 59..572 | 2555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4115304..4115646 | 405..63 | 1715 | 100 | Minus |
| 3L | 28110227 | 3L | 4114975..4115144 | 572..403 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 4122156..4122209 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:59 has no hits.
MXO03896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:58:53 Download gff for
MXO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14996-PB | 1..567 | 9..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:41 Download gff for
MXO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 180..743 | 9..572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:37 Download gff for
MXO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 180..743 | 9..572 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:37 Download gff for
MXO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4114975..4115142 | 405..572 | 100 | <- | Minus |
| 3L | 4115305..4115646 | 63..404 | 100 | <- | Minus |
| 3L | 4122156..4122209 | 9..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:41 Download gff for
MXO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4114975..4115142 | 405..572 | 100 | <- | Minus |
| arm_3L | 4115305..4115646 | 63..404 | 100 | <- | Minus |
| arm_3L | 4122156..4122209 | 9..62 | 100 | | Minus |
