MXO03905.5prime Sequence
873 bp (764 high quality bases) assembled on 2007-07-18
> MXO03905.5prime
CAGTCGACATGTCCCAGTACACGCCCAACCAGCGGCTGGACACGCCCGGC
GCCCAGGAGTTCGGATTCCCGTACTCACCGTACGAAATCCAGGAGCAGCT
GATGCAGGAGCTCTTCCAAGTGCTCGAGAGAGGTCAGGTGGGCATATTCG
AGAGTCCAACGGGAACGGGGAAGTCCCTCACCCTCACCTGCGGCGCCCTC
ACCTGGCTGGCTAGGCACGAGGAGCTGGTGCGCACGGAAATGCTGGCCAG
GATTCGCGGAGTAGAACAGGAGTTGGCTAAACTCAAGGAGGAGAGCGAGC
AGTCCAGTAACTGGCTGGAGAGCCAGGGAAAGTCCAGAGCACAGCGGGCG
GAGCTCCTTAGATTGCAGCACCTGCAGGCTTTGCTGGACAAACAAGAGCA
GCAGCTGGATCAGATCAGGAAAGGGGCTAAAAAGCATAAGCGGCAAGGAA
GGGTGCACCCAGGCAAGCTTGAGGAACTGGAGAAGGACCTGGATCCTGAA
TCCGACTCGGATTCAGAACACGAAACCGCCGATGGACCGCAGGAAGCAGC
CGAAGACCGCTATCGCCCTGGTGCAAATCNTTCTTTTGCAGCCNGCACCC
ATTCGCAGTTGGCACAAATTGTGGCCGAACTGCGGAAAACACCTCATGGC
CAGTCGGTAAGGTCCATTTCCCTGGGCTCGCGGCAGCAGCTGTGCGGGAA
TCCCGCAGTCCGGAAGCTGAAGCATGTCGGCCTGATGAACGAGCGGTGCC
TGGATATGGCTACCAAGAAAGCACGCCCCAATCCCAGCAAAAAAAGTCGG
CTAACTGCAGAGGCCAACAGTAGATGCCCGTTTAAAGCGGCTTTCCTGGT
GGAATCCCTCAGGGATTTGGCTT
MXO03905.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-PA | 2586 | CG11403-RA | 1..562 | 9..570 | 2810 | 100 | Plus |
| CG11403-PA | 2586 | CG11403-RA | 584..862 | 595..873 | 1370 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-RA | 2890 | CG11403-RA | 103..964 | 9..873 | 4235 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1238921..1239782 | 873..9 | 4160 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:16 has no hits.
MXO03905.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:02 Download gff for
MXO03905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-PA | 1..862 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:01 Download gff for
MXO03905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 93..964 | 1..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:17 Download gff for
MXO03905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 93..964 | 1..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:17 Download gff for
MXO03905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1238921..1239789 | 1..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:01 Download gff for
MXO03905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1132954..1133822 | 1..873 | 99 | | Minus |
