MXO03906.5prime Sequence
850 bp (766 high quality bases) assembled on 2007-07-18
> MXO03906.5prime
CAGTCGACATGAACAACGACAGCCACAAATATAGCGACGCCGAGGAGGAC
GAAGAAGACCTGCGAAGTTCCGAGTGGACAAAGGACTTCAAGAACCTCAC
ATTGAAGCACGAGATCTTTAAGGATATTAAACTGACACCCAAAGAGGACT
GTGATGACCTGGCACAAGTTATAGCAACCGCCAACGAAGAGGATGAACCG
GAGGACGAAGAGCCAGAGGAATACGATGAAGACGATTACGACGATATCGG
AGATGACTATGATACGTATGAGGAGGCCTATACGGGCTTTAACAAGCTTC
ACGTTCAGCCGCAGCTAACAAATGCCAGTGGAGGTGGCTCCGGCGGTGGC
GCTGGAGGTGCATCTGGTGGCTCACAACGCGTCAGCAGCTACCAACCAAA
CGAAAAGCTGTTGCGCCGCTACTCCGCCCGCATTAATGTAGAAAAGTACG
ATCCCACCACAAATATGAGCGCGCAGGCGGCCAACCGGCTGGTGAACTTC
GATCGGCGCGATAGGACACAGGTGCGTGACAAACACGACCGAGCCACTGC
GGAACAGGTAATGGATCCACGTACCCGGATGATACTCTTCAAGCTGCTGA
ATCGCGGAATGATACAGGAAATCAACGGCTGCATTTCTACGGGCAAAGAG
GCTAATGTCTATCACGCCGTTTCCAAAAATGGTGAAGAGGAGTTTGCCAT
CAAGATCTACAAGACGTCCATTCTAGTATTTAAGGACCGCGACAAATATG
TGTCAGGCGAATTCCGGTTTCGACACGGCTACTGCAAGCACAATCCGCGC
AAAATGGTGCGTACCTGGGCGGAGAAGAAATGCGAAACTACTTGCGAATG
MXO03906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11660-PA | 1758 | CG11660-RA | 1..819 | 9..827 | 4070 | 99.8 | Plus |
| CG11660-PB | 1758 | CG11660-RB | 1..819 | 9..827 | 4070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 176..1018 | 9..850 | 4175 | 99.8 | Plus |
| RIOK1-RA | 2049 | CG11660-RA | 104..946 | 9..850 | 4175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11647398..11648180 | 850..69 | 3850 | 99.7 | Minus |
| 3L | 28110227 | 3L | 11648240..11648299 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:15 has no hits.
MXO03906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:06 Download gff for
MXO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-PB | 1..843 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:27 Download gff for
MXO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 95..946 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:00 Download gff for
MXO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 95..946 | 1..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:00 Download gff for
MXO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11647398..11648180 | 69..850 | 99 | <- | Minus |
| 3L | 11648240..11648303 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:27 Download gff for
MXO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11640498..11641280 | 69..850 | 99 | <- | Minus |
| arm_3L | 11641340..11641403 | 1..68 | 94 | | Minus |
