MXO03908.5prime Sequence
859 bp (823 high quality bases) assembled on 2007-07-18
> MXO03908.5prime
CAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGGTTACTTGG
TACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCGAGAGATAA
CCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGGTCCCGATT
CTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAAGTCTTCAA
CAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACCAAGTATGC
CAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGCACAGCTAC
ACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGGAGCAGCCG
CTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACCACAGTATT
TGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCGAGGAAAGC
TACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGGCTGCCAGC
ATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAGTCAGTACA
ACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAATCGGGTAT
TCTACAAGGACAGTCTGATCCACATGAATTTCTTTAACAAATCGCTGACT
TTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTAGCTGGTCT
GAGTCTCGACTCCAAACCCTTGCAGTTCATCCAGGTTACCAACGTAACCA
AGCTCCACCTGATAACCGACGATGCAAATCAGCAGGAGGAGGAGCAAAAA
ATAAGTCACAGGATCACCAAATGCCAAATAGGCGGGCTGGATAGGCAATT
GCAACTGGT
MXO03908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PA | 2400 | CG5776-RA | 1..851 | 9..859 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..902 | 5..859 | 4260 | 99.9 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..902 | 5..859 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12703492..12703937 | 859..414 | 2230 | 100 | Minus |
| 2L | 23513712 | 2L | 12703995..12704404 | 414..5 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:30 has no hits.
MXO03908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:15 Download gff for
MXO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1..851 | 9..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:57 Download gff for
MXO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..902 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:25 Download gff for
MXO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..902 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:25 Download gff for
MXO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12703492..12703936 | 415..859 | 100 | <- | Minus |
| 2L | 12703995..12704407 | 1..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:57 Download gff for
MXO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12703492..12703936 | 415..859 | 100 | <- | Minus |
| arm_2L | 12703995..12704407 | 1..414 | 99 | | Minus |
