MXO03909.5prime Sequence
569 bp (478 high quality bases) assembled on 2007-07-18
> MXO03909.5prime
CAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCGGCGGCGGC
GAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAGCTCTTCCT
GGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAACCATCTGG
AGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATGCACTGACG
CACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTGACGCTTTT
CAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTTTGCCGTCC
AGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGGCCGCCCGA
ATCCAGCGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAGCAAGCGAT
CCAGGACTTTGATCAAGTCCTTCAAGAGGAACCCAACAACGGCTTGGTGC
TGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGGTCCTTGTA
CAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCCATGATCAC
ACAGTTGCTAGAGATCTCC
MXO03909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8286-PA | 1497 | CG8286-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P58IPK-RA | 2217 | CG8286-RA | 417..981 | 4..568 | 2810 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9587996..9588345 | 219..568 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 9587521..9587636 | 104..219 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 9587358..9587460 | 4..106 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:12 has no hits.
MXO03909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:20 Download gff for
MXO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8286-PA | 1..560 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:46 Download gff for
MXO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..981 | 1..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:44 Download gff for
MXO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..981 | 1..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:44 Download gff for
MXO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9587997..9588345 | 220..569 | 99 | | Plus |
| 3R | 9587356..9587459 | 1..105 | 98 | -> | Plus |
| 3R | 9587523..9587636 | 106..219 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:46 Download gff for
MXO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5413078..5413181 | 1..105 | 98 | -> | Plus |
| arm_3R | 5413245..5413358 | 106..219 | 100 | -> | Plus |
| arm_3R | 5413719..5414067 | 220..569 | 99 | | Plus |
