MXO03912.5prime Sequence
918 bp (771 high quality bases) assembled on 2007-07-18
> MXO03912.5prime
CAGTCGACATGCGATTGTATTGTCTCAGCGGGGACCTGGCCAAGCCATGT
TATATCATTACCTTCAAGGGCCTGCGGATTATGCTGGACTGCGGTCTCAC
GGAGCAGACAGTCCTGAATTTCCTTCCGCTGCCCTTCGTTCAGTCACTGA
AGTGGTCCAATCTGCCCAACTTCGTGCCCAGTCGGGATCATGATCCCCAA
ATGGATGGCGAGTTGAAGGACTGCTGTGGCCGGGTTTTCGTGGACTCGAC
GCCCGAGTTTAATCTACCCATGGACAAAATGCTGGATTTCAGCGAAGTGG
ATGTGATACTTATCTCGAATTATCTTAATATGCTGGCCTTGCCGTATATC
ACGGAAAACACGGGGTTCAAGGGCAAAGTCTATGCCACGGAGCCAACGCT
GCAGATCGGCCGATTTTTCCTGGAGGAGCTGGTGGACTATATCGAAGTGT
CGCCCAAGGCGTGCACCGCGCGCTTGTGGAAGGAGAAGCTTCATCTGCTG
CCCAGTCCCTTGAGCGAAGCCTTTCGCGCCAAGAAGTGGCGCACTATCTT
TAGTCTTAAGGATGTCCAAGGCAGTCTGGTCCAAGGTGACCATCATNGGG
CTACGACNGAGAAGCTGGACATCCTCGGAGCTTTTATCGCCACTCCTGTC
AGCTCGGGCTACTGCCTGGGCTCGAGCAACTGGGTACTGAGCACGGCGCA
TGAAAAGATTTGCTATGTCAGTGGTTCCTCCACGTTGACCACACATCCGC
GGCCCATCAATCAGTCGGCGCTGAAGCACGCCGATGTACTCATTATGACC
GGACTGACGCAGGCGCCGACGGTAAATCCGGACACGAAGCTGGGCGAGCT
CTGCATGAATGTGGGCTTGACGATCCGCAACAATGGGGTCTGCCTTTGAT
TCCTGTTATCCTTCGGGG
MXO03912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5222-PA | 1965 | CG5222-RA | 1..570 | 9..578 | 2850 | 100 | Plus |
| CG5222-PA | 1965 | CG5222-RA | 598..876 | 609..887 | 1370 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 65..969 | 9..917 | 4385 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16104598..16105494 | 917..17 | 4230 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 22:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10700..10873 | 245..77 | 128 | 57.6 | Minus |
MXO03912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:30 Download gff for
MXO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1..905 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:53 Download gff for
MXO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..969 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:53 Download gff for
MXO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..969 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:53 Download gff for
MXO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16104596..16105498 | 10..918 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:53 Download gff for
MXO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16097696..16098598 | 10..918 | 98 | | Minus |
