MXO03921.5prime Sequence
904 bp (795 high quality bases) assembled on 2007-07-18
> MXO03921.5prime
CAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGCAGATCCTA
GAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAGCTGGAGGA
GTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAAGTGGTCCA
GCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCAAGCACTTT
AATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCGAATGTGGA
CCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCGCTTGGACC
TTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGCTACTAATC
GATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGTGCTTTGGA
AAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAAGCGTACCG
AAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGGACCTCTCC
ATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGTAACGCCGA
TGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCAGAAGGCAA
GCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGAAGGCAAAA
CTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAAACGGACAC
AGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAATGACAACG
ATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGCCCGATGAA
GAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAGCCTGCTTA
CGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAAGTTTCCCATCATCTGCCG
ATGA
MXO03921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2890-PA | 1830 | PPP4R2r-RA | 1..896 | 9..904 | 4480 | 100 | Plus |
| CG2890-PB | 1830 | PPP4R2r-RB | 1..896 | 9..904 | 4480 | 100 | Plus |
| CG2890-PC | 1830 | PPP4R2r-RC | 1..896 | 9..904 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 2409 | CG2890-RC | 144..1039 | 9..904 | 4480 | 100 | Plus |
| PPP4R2r-RB | 2397 | CG2890-RB | 132..1027 | 9..904 | 4480 | 100 | Plus |
| PPP4R2r-RA | 2426 | CG2890-RA | 161..1056 | 9..904 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480082..10480573 | 413..904 | 2460 | 100 | Plus |
| X | 23542271 | X | 10479501..10479717 | 9..225 | 1085 | 100 | Plus |
| X | 23542271 | X | 10479835..10480024 | 225..414 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:11 has no hits.
MXO03921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:59:58 Download gff for
MXO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2890-PC | 1..895 | 9..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:36 Download gff for
MXO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 154..1055 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:48 Download gff for
MXO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 154..1055 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:48 Download gff for
MXO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10479494..10479717 | 1..225 | 98 | -> | Plus |
| X | 10479836..10480024 | 226..414 | 100 | -> | Plus |
| X | 10480084..10480572 | 415..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:36 Download gff for
MXO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10373869..10374057 | 226..414 | 100 | -> | Plus |
| arm_X | 10373527..10373750 | 1..225 | 98 | -> | Plus |
| arm_X | 10374117..10374605 | 415..903 | 100 | | Plus |
