MXO03922.5prime Sequence
848 bp (742 high quality bases) assembled on 2007-07-18
> MXO03922.5prime
CAGTCGACATGTTCACCAGCCGCGCTTCGTTTTTGGCCAATCGCCGCATG
ATTTTCGATTTCTCCGAGAAGAACAACGATATCTAGGTGGATGCTTTTGG
TATGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAATAGTCCCA
TACACAGCAACAACAATAATCCATCGCTGCTGAACAACAACAACAATAAC
AGCAACGGCACCAGCAGCAACAACAGCTTAAACGTTGGCAACAACAACAG
CAATCCGAGCTTGGGCGGCAGCAACAGCAACGCACTGGTTTCCGTAGGCA
GCAACGGTATAATGTCCGCCGCCGGTTTGGTCAACAACAATAACAATCCG
TGCAGCGCCAACCGCAATGTGGTCGCCATGGTCGACGATGACGCCTGCTT
CCGTCTGGATACGGACGCCACGGTGACGTACGGCGAGAAGGAACCGGATC
CGGACAACATCAAGATGTTCGTCGGCCAGGTGCCCAAGTCGATGGACGAG
TCGCAGCTGCGCGAGATGTTCGAGGAGTACGGCGCCGTGCACTCGATCAA
CGTTCTGCGGGACAAGGCTACCGGAATTAGCAAGGGTTGCTGCTTTGTGA
CATTTTATACGAGACACGCCGCCCTGAAAGCCCAGGATGCTTTGCATAAT
GTTAAGACGCTAAATGGGATGTACCATCCCATTCAAATGAAGCCCGCCGA
TAGCGAGAATCGCAATGAACGCAAACTCTTTGTGGGTATGCTAAACAAGA
AGCTGAACGAGAACGACGTTCGCAAGCTATTTGAAGTCCACGGAGCCATC
GAGGAGTGCACCGTCCTTCGGGAACAAAACGGACAGAGCAGGGGTTGT
MXO03922.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PA | 1815 | aret-RA | 1..840 | 9..848 | 4100 | 99.5 | Plus |
| CG31762-PC | 1851 | aret-RC | 1..840 | 9..848 | 4100 | 99.5 | Plus |
| CG31762-PB | 2433 | aret-RB | 702..1458 | 92..848 | 3735 | 99.7 | Plus |
| CG31762-PD | 1086 | aret-RD | 1..111 | 738..848 | 505 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RF | 3342 | CG31762-RF | 334..1173 | 9..848 | 4140 | 99.5 | Plus |
| aret-RE | 2302 | CG31762-RE | 334..1173 | 9..848 | 4140 | 99.5 | Plus |
| aret-RA | 2651 | CG31762-RA | 334..1173 | 9..848 | 4140 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12271591..12272086 | 92..587 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 12298567..12298698 | 717..848 | 630 | 98.5 | Plus |
| 2L | 23513712 | 2L | 12278836..12278919 | 585..668 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 12271265..12271341 | 9..85 | 385 | 100 | Plus |
| 2L | 23513712 | 2L | 12282513..12282562 | 668..717 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 12358120..12358243 | 444..567 | 185 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2540 | 129..361 | 256 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6899 | 114..281 | 239 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6919 | 183..367 | 239 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2514 | 105..281 | 235 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6848 | 155..281 | 231 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 141..305 | 222 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6946 | 114..280 | 215 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2630 | 111..367 | 207 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2394 | 194..281 | 197 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6886 | 210..367 | 173 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2452 | 207..366 | 168 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2474 | 198..367 | 167 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 155..254 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1154 | 154..227 | 153 | 70.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1142 | 201..281 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2532 | 155..227 | 141 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1584 | 197..281 | 130 | 62.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2014..2104 | 154..253 | 128 | 64 | Plus |
MXO03922.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:04 Download gff for
MXO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PC | 1..840 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:26 Download gff for
MXO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1173 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:18 Download gff for
MXO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1173 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:18 Download gff for
MXO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12271265..12271347 | 9..91 | 97 | -> | Plus |
| 2L | 12271591..12272084 | 92..585 | 100 | -> | Plus |
| 2L | 12278837..12278919 | 586..668 | 100 | -> | Plus |
| 2L | 12282514..12282562 | 669..717 | 100 | -> | Plus |
| 2L | 12298568..12298698 | 718..848 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:26 Download gff for
MXO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12271265..12271347 | 9..91 | 97 | -> | Plus |
| arm_2L | 12271591..12272084 | 92..585 | 100 | -> | Plus |
| arm_2L | 12278837..12278919 | 586..668 | 100 | -> | Plus |
| arm_2L | 12282514..12282562 | 669..717 | 100 | -> | Plus |
| arm_2L | 12298568..12298698 | 718..848 | 98 | | Plus |
