MXO03924.5prime Sequence
871 bp (576 high quality bases) assembled on 2007-07-18
> MXO03924.5prime
CAGTCGACATGGAATCCCGGCTACCGAAACCGTCGGGCCTGAAGAAACCC
CAAATGCCGATTAAAACCGTGCTGCCCACAGATCGAATTCGCGCAGGATT
GGGAGGTGGAGCCGCTGGAGCAGGCGCCTTCAATGTCAATGCCAACCAGA
CATACTGCGGCAACTTATTGCCGCCCCTCTCAAGGGACCTCAACAATCTG
CCCCAGGTGCTGGAGCGTCGCGGAGGAGGAGCACGTGCCGCCTCCCCAGA
GCCCATGAAGTTGGGCCACCGGGCCAAGCTGAGACGTAGCCGTAGCGCTT
GCGACATCAACGAACTGCGTGGTAACAAGCGCACTGCGGCTGCTCCTTCA
TTGCCCAGCATTCCCAGCAAAGTATCCCGCCTGGGCGGTGCACTCACTGT
TTCCAGCCAGCGACTAGTGCGTCCTGCGGCGCCTTCGTCAATAACAGCAA
CAGCTGTCAAAAGACCACCAGTAACGCGTCCTGCTCCACGGGCTGCAGGA
GGAGCAGCCGCCAAGAAACCAGCAGGAACAGGAGCAGCAGCTTCGTCAGG
AGCCGCGGCTGCTGCTCCCAAGCGCATCGTCTCCCTACGACTTCAAGGCC
CGCTTCCACGATCTGCTAGAGAAGCACAAGGTGCTTAAGACAAAGTACGA
AAAGCAAACAGAGGACATGGGCGAGCTGGAGTCCATGCCTCAGCAACTGG
AGGAGACGCAGAACAAGCTTATCGAGACGGAGTCCTCGCTGAAGAACACC
CAGAGCGACAACGAGTGTCTTCAGAGGCAGGTGAAGCAGCATACCGCCAA
AATTGAAACAATCACATCGACGCTGGGCAGGACCAAAGAGGAGCTATCCG
AGCTGCAAGCAATACATGAGA
MXO03924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7831-PA | 2103 | ncd-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG7831-PA | 2103 | ncd-RA | 572..862 | 581..871 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2720 | CG7831-RB | 502..1363 | 9..871 | 4290 | 99.9 | Plus |
| ncd-RA | 2340 | CG7831-RA | 122..983 | 9..871 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29805707..29806346 | 870..230 | 3155 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29806404..29806626 | 231..9 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2880 | 408..565 | 136 | 57 | Plus |
MXO03924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:15 Download gff for
MXO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7831-PA | 1..861 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:44 Download gff for
MXO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..982 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:01 Download gff for
MXO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..982 | 1..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:01 Download gff for
MXO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29805707..29806344 | 232..870 | 99 | <- | Minus |
| 3R | 29806404..29806635 | 1..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:44 Download gff for
MXO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25631429..25632066 | 232..870 | 99 | <- | Minus |
| arm_3R | 25632126..25632357 | 1..231 | 98 | | Minus |
