MXO03930.5prime Sequence
847 bp (780 high quality bases) assembled on 2007-07-18
> MXO03930.5prime
CAGTCGACATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCGCCGCGGAG
AACGGCGGAAACACCGCGCAGGAGGTGTCTTCGACAACTCAGCCCATAGA
GCCCACAAAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGATCCAAGAGG
GCAAGGTTGGCATTGGATTCAACAACATATTTAACCGAATTCCTTCGTTC
GTGGGTGCCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAGGAGTTCAA
GAAAGCACAGCACATCAAGGTGAACATCGATCGCGTCTTGCATGAGTTTA
AGGAACTGGCATTGCTGGCCGACAAGTCCGTATACTTGCCCAGCACCCGC
GAATCTTCTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGATGCCACCGA
GGAGCAGAAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAAGTTTCGCT
CGGAAATTGGATTGGACAGCGGTCTGAAGCTGGACATCGTGGTTATTGGC
TCTGTTGTAGTGTCACGCGAGGGTTACCGCATTGGACGCGGAAATGGTTT
CGCTGATCTGCGACATCGGCCTCCTTATTGAACTGGGAGCCATTACACCG
AAGACAATTATTGTCACAATCGTGCACGACATGCAGGTGGTGGACTCACT
GCCCCCGAATCTATTCCAGAAGTACGATACGCCAGTTGATATCATTGCAA
CACCCACAGAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCCCAATGGC
GTTTACTGGGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGCCCGTGCT
GCAGCAGCTTAAGGAAAGGGAGGAGAAGGCGGGGAAATCCATATCCC
MXO03930.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14648-PA | 1638 | CG14648-RA | 1..552 | 9..560 | 2760 | 100 | Plus |
| CG14648-PA | 1638 | CG14648-RA | 553..838 | 562..847 | 1405 | 99.6 | Plus |
| CG14648-PB | 1017 | CG14648-RB | 1..217 | 631..847 | 1060 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 2691 | CG14648-RA | 127..964 | 9..847 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4404697..4405288 | 255..847 | 2885 | 99.5 | Plus |
| 3R | 32079331 | 3R | 4404465..4404639 | 84..258 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4403202..4403280 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:11 has no hits.
MXO03930.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:24 Download gff for
MXO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14648-PA | 1..838 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:50 Download gff for
MXO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 147..991 | 1..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:35 Download gff for
MXO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 120..964 | 1..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:35 Download gff for
MXO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4404469..4404639 | 88..258 | 100 | -> | Plus |
| 3R | 4403195..4403280 | 1..87 | 95 | -> | Plus |
| 3R | 4404701..4405288 | 259..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:50 Download gff for
MXO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 228917..229002 | 1..87 | 95 | -> | Plus |
| arm_3R | 230191..230361 | 88..258 | 100 | -> | Plus |
| arm_3R | 230423..231010 | 259..847 | 99 | | Plus |
