MXO03935.5prime Sequence
522 bp (342 high quality bases) assembled on 2007-07-18
> MXO03935.5prime
CAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCGTTTCGCGC
GCCTCCACCTCCACGCCGGTGGGCGGGGCATCCAGCTCGTCAAGGGTGGG
CGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCAGGAGAAGG
AGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCGATCGCATG
CGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTGAATCTCGC
CCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGTCTATGAGA
AGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCAAAGAGAAG
GCCAAGCTTGAGATCGATATCAAGCGTCTGTGGAAGGAGAACCACCACCC
CAACCCCAGACTCGACAAAAAGACGAAAGAGGCTACCGTGGCAGAGAACA
ATGCCCGCCTGTATGAAAACCGCTACAACGAGATGAATGGCAAGTACAAC
AAATCGTAGGACGATCGCAAGA
MXO03935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10119-PA | 1866 | LamC-RA | 1..384 | 9..392 | 1870 | 99.4 | Plus |
| CG10119-PA | 1866 | LamC-RA | 397..514 | 405..522 | 440 | 94.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RB | 2450 | CG10119-RB | 147..660 | 9..522 | 2360 | 97.3 | Plus |
| LamC-RA | 2367 | CG10119-RA | 147..660 | 9..522 | 2360 | 97.3 | Plus |
| Lam-RD | 3191 | CG6944-RD | 348..437 | 144..233 | 210 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14575242..14575625 | 392..9 | 1890 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14572735..14572849 | 522..408 | 485 | 94.8 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 144..233 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:19 has no hits.
MXO03935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:41 Download gff for
MXO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10119-PA | 1..513 | 9..521 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:26 Download gff for
MXO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..659 | 9..521 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:02 Download gff for
MXO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..659 | 9..521 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:02 Download gff for
MXO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14572736..14572847 | 410..521 | 94 | <- | Minus |
| 2R | 14575225..14575625 | 9..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:26 Download gff for
MXO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10460241..10460352 | 410..521 | 94 | <- | Minus |
| arm_2R | 10462730..10463130 | 9..409 | 98 | | Minus |
