MXO03938.5prime Sequence
809 bp (747 high quality bases) assembled on 2007-07-18
> MXO03938.5prime
CAGTCGACATGGACATGGAGAGGAGCATTTTTGGCCGCGACCATGAGGGT
TACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTGGGCTCGGA
AGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAGTGTGGCCG
ATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTACCGCCTCC
ATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCGGAATTGGC
TTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATTTGGCTTCC
GGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAATTGCTGAGC
ATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATCGCCCACCT
GGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGAGCATGTGG
ATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCCGTCAGGGT
ATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCAGGAGCGTT
GGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGTTAAAGCTT
CTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGGACCTTTTG
CGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGGACAGGCAT
TCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTTTCCTGACA
TTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGCTTCTCTTC
ATGGAGGAG
MXO03938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-PA | 2415 | CG12241-RA | 13..801 | 21..809 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 155..956 | 8..809 | 3980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15219545..15220068 | 74..597 | 2620 | 100 | Plus |
| 3R | 32079331 | 3R | 15220128..15220341 | 596..809 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 15219410..15219476 | 8..74 | 305 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:26 has no hits.
MXO03938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:50 Download gff for
MXO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-PA | 1..801 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:33 Download gff for
MXO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..956 | 1..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:06 Download gff for
MXO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..956 | 1..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:06 Download gff for
MXO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15219401..15219476 | 1..74 | 92 | -> | Plus |
| 3R | 15219546..15220068 | 75..597 | 100 | -> | Plus |
| 3R | 15220130..15220341 | 598..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:33 Download gff for
MXO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11045123..11045198 | 1..74 | 92 | -> | Plus |
| arm_3R | 11045268..11045790 | 75..597 | 100 | -> | Plus |
| arm_3R | 11045852..11046063 | 598..809 | 100 | | Plus |
