MXO03939.5prime Sequence
837 bp (715 high quality bases) assembled on 2007-07-18
> MXO03939.5prime
CAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAGTAATTTTC
GTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGCCGAATCTT
ACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCACAGCCACA
TGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGACCGCGGTT
GAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAGGCCTCGGC
CCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAATCCGGACT
CGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGGATCCGGAA
CAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTGGCCAGCGA
AAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACCCGAAACTG
TTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCAGCACGCCT
GACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATTCAGATGCT
GCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGGCGGCCACT
GCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCTGCCTCTGC
GTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGGAATGGTGA
CTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAATGGCGCACA
TCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCTACGTTCTC
TTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATT
MXO03939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17610-PA | 888 | grk-RA | 1..829 | 9..837 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grk-RA | 1718 | CG17610-RA | 375..1203 | 9..837 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8431875..8432497 | 698..76 | 3115 | 100 | Minus |
| 2L | 23513712 | 2L | 8431601..8431742 | 837..696 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 8433013..8433082 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 131..181 | 119 | 75 | Plus |
MXO03939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:55 Download gff for
MXO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17610-PA | 1..829 | 9..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:12 Download gff for
MXO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1203 | 4..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:46 Download gff for
MXO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grk-RA | 371..1203 | 4..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:46 Download gff for
MXO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8431601..8431741 | 697..837 | 100 | <- | Minus |
| 2L | 8431877..8432494 | 79..696 | 100 | <- | Minus |
| 2L | 8433013..8433086 | 4..78 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:12 Download gff for
MXO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8431601..8431741 | 697..837 | 100 | <- | Minus |
| arm_2L | 8431877..8432494 | 79..696 | 100 | <- | Minus |
| arm_2L | 8433013..8433086 | 4..78 | 97 | | Minus |
