MXO03940.5prime Sequence
894 bp (760 high quality bases) assembled on 2007-07-18
> MXO03940.5prime
CAGTCGACATGTCTAAGTTTCTGGACATGCTATCGGGGAGCCAGTGCGTC
AGCCTGGAAAAGTGCGGCGATGTGGTGGTCTCAACCAACGACTGTATGAT
TGCACTTTACTGCCACTTCTGCCGTGACCTCTTCACACAACTGCCGGAGT
TCTTAAGACACCTCCAAAGCAACCATTCGGATGTGCTGCACTTCACCAAG
GAGCACAACGTTTACAGCGTGGAGGAGCTGTTGTCCGGTGAGCAGGGTAA
AGCCCACGAGGACGCCCAGTCGGCGGGGCACAACAGCAGCAGCGGTGACT
CTAGTTCACTGATGAATTCAGAGGATTCTAGGGCCATCGAAGGCTCAGAA
GATAACTCAGACAATAGCCCAATGAAACCTGAACAAATAGGGAAACAGAG
TGAAATAAACCTGCTAGCGGAAGTGACAAACATTTTATTGCAAACCAACG
ACAAGGAATTAAAACCCGAAAATGGCGTATTCAACAGACCACGCAAAAAG
GCTAATAACGAGAGCAGTTCTTTGAAGATATGCGATCTGAAGAGTCACAC
TATTGCAAGGACTTCGCGAAAGCGAATGAGCATGGTAAAGAACCGCATCC
TGCGAGTCCTTGACAGCGATTTGTCTGCAAAGCTTGAAATTAAACCTCCA
GAGCCCAACTCCAAACTTTCTATAACTGAGCCCATCCAAGAAGACAACAT
ACCTGGAACATGTTTTGACACTCCTACAAAGCCCATACCGAGCTCATCTC
AATTAAGTGTAAGAAAGTCTTCTTTAACAGAGGCAAACCAAATATGTACC
AAATATGCCGAGAAGAAACGGCGCCTACCATGCCTAAGCTACTGAACTGT
GTACCCAAGCCAATATTAACTAGTCAACAAGCTCATACTAATGC
MXO03940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8961-PA | 1950 | tef-RA | 1..810 | 9..818 | 4050 | 100 | Plus |
| CG8961-PA | 1950 | tef-RA | 809..887 | 816..894 | 345 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 2168 | CG8961-RA | 104..990 | 9..894 | 4380 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17055782..17056298 | 894..379 | 2505 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17056363..17056732 | 378..9 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:20 has no hits.
MXO03940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:00:59 Download gff for
MXO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8961-PA | 1..887 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:26 Download gff for
MXO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..990 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:51 Download gff for
MXO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..990 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:51 Download gff for
MXO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17055782..17056298 | 379..894 | 99 | <- | Minus |
| 2R | 17056363..17056732 | 9..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:26 Download gff for
MXO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12943287..12943803 | 379..894 | 99 | <- | Minus |
| arm_2R | 12943868..12944237 | 9..378 | 100 | | Minus |
