MXO03941.5prime Sequence
879 bp (734 high quality bases) assembled on 2007-07-18
> MXO03941.5prime
CAGTCGACATGTCGCTCACCGATGTCTTGGAATTGAACAAAACGGAGTTG
TTCGCGAAGATTCGCAATGGGTTGCCCGTGGTGCAAAGGACTCAGAACCT
GCTGGACTGCAAGGACGATCTGCTCTTTGCCTGGCACGCGAAGGACAGCT
GTCTGTTGGTTCGCAACTGGCGCTCATCGCTGGCGGCAAAGGTGAATATC
CAGTTCCAGACACTGATTCCATCGAGCTTGGTGAGCCTGGAGGTGGACCG
CGTGCTGGCCTCCAACGAGGGCTCCCTCGTGGCACTAAGTGGACCGCGCG
GCGTTGTCATAATGGAGCTGCCCCGCCGCTGGGGCCCCGATGGATACTAC
AAGGATGGCAAGCCAGTGATCACCTGCCGCACGTTCGGCCTGGACACTCA
GCTTTTCCTAAAAAACCCGCACTTGGAAGTGCGCCAGGTCCGCTGGCATC
CGCACTCCGTGTCAGACTCCACGCTGCTCGTGCTGCTCAACAACAACACG
ATTCGAGTGTACAATCACTCCAAGTTGCGCCACGTGTGGCAGGTGGGTCC
CCCGGTGCTTCGAANGTGGGGCCAATAACNTCGCTATGCGACTTTTGGCG
AGCTAGCCGTTGACTTTGACATCGCTCCTGCTGCAAAACCACGTGTCACT
GAACCAGAAACAGCCGGCAATAACGAAACCACTTTGGATAAGAGCAACAA
AACCCTTGTGGCGGCCAAATCGCTGCCGAAACAGGAGAGGATAGAGTGGC
CCATGGTTGTGCTCCGCGAGAATGGAAACATCTACATTTTGATGACCGGC
GTGGATTCGGAGAATACGCGCCTGCANGGCCCCGTTACCATAACGCCACA
GGCACATGACAATTATGGACTGGAGTCCT
MXO03941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6819-PA | 2109 | mbo-RA | 1..556 | 9..564 | 2780 | 100 | Plus |
| CG6819-PA | 2109 | mbo-RA | 583..868 | 594..879 | 1411 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-RA | 2566 | CG6819-RA | 52..919 | 9..879 | 4269 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12678134..12679001 | 879..9 | 4194 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:10 has no hits.
MXO03941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:05 Download gff for
MXO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6819-PA | 1..868 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:14 Download gff for
MXO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 46..919 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:46 Download gff for
MXO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 46..919 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:46 Download gff for
MXO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12678134..12679007 | 1..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:14 Download gff for
MXO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8503856..8504729 | 1..879 | 99 | | Minus |
