MXO03942.5prime Sequence
839 bp (827 high quality bases) assembled on 2007-07-18
> MXO03942.5prime
CAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATGTCGAGAAG
CCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTACGAAAGGAG
TATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCGAAATGACT
ACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATTATGGCGGT
GGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGTGATAGTCG
CGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTTGAGCATCG
CTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCAATATATCC
CGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAGTGCGACTT
AATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGATGCTATCA
ATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGACAGGATCGC
GATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGCGGATACGA
CAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTCTGAGTCCA
ATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAGCCCTGAAT
AAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGTCCACCGCT
AACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCTGACAAAAT
CGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAGTTTCTTAT
GTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATT
MXO03942.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-08-06 13:01:08 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 129..959 | 9..839 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8122853..8123503 | 9..659 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 8123558..8123738 | 659..839 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:11 has no hits.
MXO03942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:30 Download gff for
MXO03942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..959 | 9..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:22 Download gff for
MXO03942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..959 | 9..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:22 Download gff for
MXO03942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8122853..8123503 | 9..659 | 100 | -> | Plus |
| 3R | 8123559..8123738 | 660..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:30 Download gff for
MXO03942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3948575..3949225 | 9..659 | 100 | -> | Plus |
| arm_3R | 3949281..3949460 | 660..839 | 100 | | Plus |
