MXO03943.5prime Sequence
851 bp (730 high quality bases) assembled on 2007-07-18
> MXO03943.5prime
CAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTGCCTCGAAT
CCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTATCCATTAG
CGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGTTGAAGCCT
GGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTGAGGATCAC
ATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGTCAAGGAAG
CATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACCAACGGAGC
AGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTGGTGCAGTG
CCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCGCAGGTCTC
CGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGGACTGCGCG
AGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCGGCGTTTCA
TCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTGGTAGCGGG
AGGAGCAAACACCNGCCACCTCTTCCAACTCATCCAAGTGGATGCTCTCC
CCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCAGTAAACT
CAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGAGCTGGAG
AAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAACAAGTAC
GAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCGATTCCGA
GGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGGGGCATCT
T
MXO03943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10637-PA | 4467 | Nak-RA | 1614..2169 | 8..563 | 2780 | 100 | Plus |
| CG10637-PB | 2853 | Nak-RB | 1..555 | 9..563 | 2775 | 100 | Plus |
| CG10637-PC | 2097 | Nak-RC | 1614..2086 | 8..480 | 2365 | 100 | Plus |
| CG10637-PA | 4467 | Nak-RA | 2170..2456 | 565..851 | 1435 | 100 | Plus |
| CG10637-PB | 2853 | Nak-RB | 556..842 | 565..851 | 1435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 1943..2785 | 8..851 | 4195 | 99.9 | Plus |
| Nak-RA | 5196 | CG10637-RA | 1943..2785 | 8..851 | 4195 | 99.9 | Plus |
| Nak-RE | 4280 | CG10637-RE | 1943..2415 | 8..480 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18960311..18960682 | 851..479 | 1815 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18963170..18963412 | 250..8 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 18962885..18963115 | 480..250 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:18 has no hits.
MXO03943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:15 Download gff for
MXO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10637-PA | 1610..2456 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:18 Download gff for
MXO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1939..2785 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:51 Download gff for
MXO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1939..2785 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:51 Download gff for
MXO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18960311..18960680 | 481..851 | 99 | <- | Minus |
| 2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
| 2L | 18963171..18963416 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:18 Download gff for
MXO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18960311..18960680 | 481..851 | 99 | <- | Minus |
| arm_2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
| arm_2L | 18963171..18963416 | 1..249 | 98 | | Minus |
