MXO03947.5prime Sequence
822 bp (737 high quality bases) assembled on 2007-07-18
> MXO03947.5prime
CAGTCGACATGTTTGCTACGCTGAAAAACAAGATCAAGGAGGAAACTGGC
GATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAACAACAACAA
CAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAACTCAGCTG
ATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAATTGTGCGAG
CTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACCGTCACGCA
GGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAAGACCAACG
AGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGGACATATAC
TGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAGATTGACAA
GCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGATCGCATGG
GTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCGAGGAACTA
GAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGCGACGAACT
AGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCTGACCACAA
CACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGCGCATGAAA
ATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAACTCCGAGCA
ACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACAGCACTTAG
AGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGAGTGGCCAG
AATCTGGCGCTGGAAACCCAAG
MXO03947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4840-PA | 1836 | CG4840-RA | 1..814 | 9..822 | 4045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RC | 2227 | CG4840-RC | 240..1053 | 9..822 | 4055 | 99.9 | Plus |
| cbs-RB | 2233 | CG4840-RB | 240..1053 | 9..822 | 4055 | 99.9 | Plus |
| cbs-RA | 2257 | CG4840-RA | 240..1053 | 9..822 | 4055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13451088..13451729 | 181..822 | 3210 | 100 | Plus |
| 2R | 25286936 | 2R | 13450825..13450998 | 9..182 | 855 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:49:27 has no hits.
MXO03947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:26 Download gff for
MXO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4840-PA | 1..814 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:32 Download gff for
MXO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1053 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:05 Download gff for
MXO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1053 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:05 Download gff for
MXO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13450825..13450998 | 9..182 | 99 | -> | Plus |
| 2R | 13451090..13451729 | 183..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:32 Download gff for
MXO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9338330..9338503 | 9..182 | 99 | -> | Plus |
| arm_2R | 9338595..9339234 | 183..822 | 100 | | Plus |
