MXO03948.5prime Sequence
892 bp (760 high quality bases) assembled on 2007-07-18
> MXO03948.5prime
CAGTCGACATGGGAACTAAAAAGGTCAAAATCAGCTCGGTCAAGCGGGCT
GCTCACCTGAAGTCGAAAAAAACACCGCTTTCTAAGCGAGCAGCAACAAA
AACAGAAGCAAAAGCGCGACCAACTGAAATCGAAGCGCGAACAGGGTCAG
AATATATTCTCCCAAAAGGCGAGAAAGCGGGACAACTTAGCACAGCGTAA
AAAGCACAACAAATTGGCCTCCCTGGGCTTGGATCCGCTCGAGGAAGACA
ACGAGGATGGCGACGATGAGATGCTTGAAAACGTTGCGGACATGCTGGAT
GGCGATGATCTTGCCCTGCTCCAGGCTAACAAACGCAAGCGAAAGGCCAA
GACGACCGGCGAGAATGATCCTGACCAAGGACAATCCATCGGCTTGGAAA
GGGCCTATGCCTCTGACACGAAAAAAGAGCAGGACGCGCAAAAAATAAAG
TTGGATTTGCTGCCAATCAAGTCCAGGGATGGTCAGATTATCACCCGTAC
GACAGAGGTGGATTACATACCTAAGCCCAAGCAGAAAAAGAAGAATGAAG
AAGAAGAGGAGGATGATTCCGAGGAAGACGGTGATACGGAGTATGAGGAC
AGCGATGACGATGTGGTCAATGATGTCGAGGCCGCCACCGCCGCTCCCGT
CCAAAAACTTATCTCTACCACGGATCTACTTATTGCCCGGCAGCAGGAGA
TCGAACGCCAGAAGTATCGCATTGGAATCATTTGTTCCGGGCTGCTCGAA
AAGCCAGAGGATAAGATGCGCAACTTTCATGCTCTGTACGAACTCATGGA
CGAAATCAACCCAGCCAGTCGACAGGCCAACCTAATGGCCGTCAGAAAGC
TGGCCATAATCTCTGTCACCGAGATATCAAAGATATCTTGCC
MXO03948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-PA | 2469 | CG1234-RA | 80..868 | 89..877 | 3945 | 100 | Plus |
| CG1234-PA | 2469 | CG1234-RA | 1..79 | 9..87 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1234-RA | 2572 | CG1234-RA | 87..970 | 9..892 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7245948..7246822 | 892..18 | 4280 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6786 | 83..152 | 116 | 62.9 | Plus |
MXO03948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:31 Download gff for
MXO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-PA | 1..884 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:56 Download gff for
MXO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..970 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:07 Download gff for
MXO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1234-RA | 87..970 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:07 Download gff for
MXO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7245948..7246822 | 18..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:56 Download gff for
MXO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3071670..3072544 | 18..892 | 99 | | Minus |
