Clone MXO03950 Report

Search the DGRC for MXO03950

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:39
Well:50
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7456-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03950.5prime Sequence

419 bp (387 high quality bases) assembled on 2007-07-18

> MXO03950.5prime
CAGTCGACATGAGTGTTCTGGAACAGCTGGGTGCTCTAGATATCGGTACA
AATGAGCAGGTGGACGAAACGCTGCAGCGGATTGCCGACGAAGAGGCAAA
AGTTAACGAGAAACTGGAGTCGCTGCTGGCCAAACAATGCCAGATTGAGG
CCAAAATGAGTGGCATTGGGCGATCACTCAGCCTGCTTCACACGGTGGAC
AGCGATTCCAACAAGCTGAACGACCAGATCGTAAACACTGCCCAGTTGGC
CGAATCGGTGAGCGCCAAGGTGCGCCGTTTGGATTTGGCCAGGTGCCGTG
CCTCCGAGTGCCAGCAGCGGGTGCACGATCTGATCGACCTGCATCTGTGT
AGCCAGGGCGTGGTGAAGGCCATCGGCGAGGAGGACTACGAGAAGAGTGC
CACCCCCATTGCCCGCTTC

MXO03950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7456-PA 2331 CG7456-RA 1..411 9..419 2030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7456-RA 2666 CG7456-RA 126..536 9..419 2040 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10488030..10488355 419..94 1615 99.7 Minus
2L 23513712 2L 10488410..10488497 96..9 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:01:54 has no hits.

MXO03950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:40 Download gff for MXO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7456-PA 1..411 9..419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:10 Download gff for MXO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 119..536 1..419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:22 Download gff for MXO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7456-RA 119..536 1..419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:22 Download gff for MXO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10488030..10488353 96..419 99 <- Minus
2L 10488411..10488504 1..95 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:10 Download gff for MXO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10488030..10488353 96..419 99 <- Minus
arm_2L 10488411..10488504 1..95 96   Minus