MXO03951.5prime Sequence
787 bp (765 high quality bases) assembled on 2007-07-18
> MXO03951.5prime
CAGTCGACATGGCCGAGGACTTTGCTTTGGAGGCGATGCTCGAGGCGCCG
TACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGTGGACGCAA
GCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGACGACTACG
CCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCACACAAAAAG
CAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGCAAATCTCG
ACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGATAAGGAGC
GCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCAGGGAAGGT
GGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGACAGATCTCG
TCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTACGGCGATC
GTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCAAGTCGTTG
CAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCCCGCGATCA
GCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAGCCATTCCC
GCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTCCGCGACGC
CGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAACTCAGTCC
CGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTCGCAGCGAG
TGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGT
MXO03951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11266-PA | 1785 | CG11266-RA | 1..779 | 9..787 | 3845 | 99.7 | Plus |
| CG11266-PB | 1785 | CG11266-RB | 1..779 | 9..787 | 3845 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caper-RB | 2457 | CG11266-RB | 245..1023 | 9..787 | 3865 | 99.7 | Plus |
| Caper-RA | 2128 | CG11266-RA | 181..959 | 9..787 | 3865 | 99.7 | Plus |
| Caper-RL | 2484 | CG11266-RL | 591..1315 | 63..787 | 3625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7035636..7036035 | 217..616 | 2000 | 100 | Plus |
| 2L | 23513712 | 2L | 7036185..7036355 | 617..787 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 7035407..7035562 | 63..218 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 7032965..7033018 | 9..62 | 240 | 96.3 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 668..714 | 112..66 | 118 | 72.3 | Minus |
MXO03951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:45 Download gff for
MXO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-PB | 1..779 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:38 Download gff for
MXO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-RA | 175..959 | 4..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:53 Download gff for
MXO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caper-RA | 175..959 | 4..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:53 Download gff for
MXO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7032959..7033018 | 4..62 | 93 | -> | Plus |
| 2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| 2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| 2L | 7036185..7036355 | 617..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:38 Download gff for
MXO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7032959..7033018 | 4..62 | 93 | -> | Plus |
| arm_2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| arm_2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| arm_2L | 7036185..7036355 | 617..787 | 100 | | Plus |
