MXO03953.5prime Sequence
792 bp (776 high quality bases) assembled on 2007-07-18
> MXO03953.5prime
CAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGCTGGTGGGC
GCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCCACAGGAGA
TGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGCCACGGCCT
CCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCGAAGGACTC
GAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCCCTGGTTGA
TTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAAGGGTTGGC
TGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGATGCCATCG
ATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCGGGACTCCG
CAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGCTGTCGCCG
GAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCGAGGATGAC
GACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCGCATCCTGC
ATCGGGCGGTGGCACGCCCACCGGCNGACGAGGGTCAAATCGGACAGGGT
AAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGGCCAAACA
CTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGCAAAATCA
AGGAAACTGTCAAGGATAATACCATTCTCGACTCGTTCAACAAGGAACAG
GAAGCTTTCATCAAGGGCCAGGGAGGCGTGGGCAATGGAGCA
MXO03953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8884-PA | 1656 | Sap47-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PB | 1125 | Sap47-RB | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PC | 1656 | Sap47-RC | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PD | 1656 | Sap47-RD | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PE | 1656 | Sap47-RE | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PH | 1656 | Sap47-RH | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG8884-PG | 1608 | Sap47-RG | 216..519 | 272..575 | 1520 | 100 | Plus |
| CG8884-PF | 1056 | Sap47-RF | 216..519 | 272..575 | 1520 | 100 | Plus |
| CG8884-PA | 1656 | Sap47-RA | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PB | 1125 | Sap47-RB | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PC | 1656 | Sap47-RC | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PD | 1656 | Sap47-RD | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PE | 1656 | Sap47-RE | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PH | 1656 | Sap47-RH | 568..783 | 577..792 | 1080 | 100 | Plus |
| CG8884-PG | 1608 | Sap47-RG | 520..735 | 577..792 | 1080 | 100 | Plus |
| CG8884-PG | 1608 | Sap47-RG | 1..215 | 9..223 | 1075 | 100 | Plus |
| CG8884-PF | 1056 | Sap47-RF | 1..215 | 9..223 | 1075 | 100 | Plus |
| CG8884-PF | 1056 | Sap47-RF | 542..714 | 620..792 | 865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap47-RE | 4989 | CG8884-RE | 760..1544 | 7..792 | 3905 | 99.9 | Plus |
| Sap47-RD | 5171 | CG8884-RD | 942..1726 | 7..792 | 3905 | 99.9 | Plus |
| Sap47-RC | 4843 | CG8884-RC | 614..1398 | 7..792 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15951602..15951850 | 272..520 | 1245 | 100 | Plus |
| 3R | 32079331 | 3R | 15936124..15936340 | 7..223 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 15954583..15954683 | 620..720 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 15954156..15954259 | 519..623 | 460 | 98.1 | Plus |
| 3R | 32079331 | 3R | 15954747..15954818 | 721..792 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15944947..15944996 | 222..271 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:14 has no hits.
MXO03953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:54 Download gff for
MXO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8884-PA | 1..782 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:05 Download gff for
MXO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap47-RC | 608..1397 | 1..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:17 Download gff for
MXO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap47-RC | 608..1397 | 1..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:17 Download gff for
MXO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15936118..15936340 | 1..223 | 98 | -> | Plus |
| 3R | 15944949..15944996 | 224..271 | 100 | -> | Plus |
| 3R | 15951602..15951850 | 272..520 | 100 | -> | Plus |
| 3R | 15954158..15954255 | 521..619 | 98 | -> | Plus |
| 3R | 15954583..15954683 | 620..720 | 100 | -> | Plus |
| 3R | 15954747..15954817 | 721..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:05 Download gff for
MXO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11780305..11780405 | 620..720 | 100 | -> | Plus |
| arm_3R | 11780469..11780539 | 721..791 | 100 | | Plus |
| arm_3R | 11779880..11779977 | 521..619 | 98 | -> | Plus |
| arm_3R | 11761840..11762062 | 1..223 | 98 | -> | Plus |
| arm_3R | 11770671..11770718 | 224..271 | 100 | -> | Plus |
| arm_3R | 11777324..11777572 | 272..520 | 100 | -> | Plus |
