MXO03954.5prime Sequence
828 bp (754 high quality bases) assembled on 2007-07-18
> MXO03954.5prime
CAGTCGACATGGAAATGCGTCTGAATGCGGCTTCCATATGGCTGTTAATA
CTGTCGTATGGAGCAACTATTGCTCAAGGAGAAAGAACCCGCGATAAGAT
GTACGAGCCCATTGGAGGAGCTAGCTGTTTCCGACGGCTGAATGGCACCC
ATCAGACAGGCTGTTCCTCAACCTACTCCGGTTCCGTGGGCGTACTACAT
CTAATAAACGTCGAGGCCGACCTGGAATTTCTTCTTAGCAGCCCACCATC
TCCACCTTACGCCCCCATGATACCACCTCACCTGTTCACACGTAACAACC
TGATGCGCCTAAAGGAAGCCGGACCAAAGAACATTTCTGTGGTGCTGCTG
ATCAACCGCACGAACCAGATGAAGCAGTTCTCGCACGAACTCAACTGCCC
CAATCAGTACAGCGGCCTGAACAGCACCAGTGAGACCTGCGACGCCAGCA
ATCCAGCCAAAAACTGGAATCCCTGGGGCACTGGACTTCTGCACGAGGAC
TTTCCCTTTCCTATCTATTACATAGCCGATTTGGATCAGGTCACCAAGCT
AGAGAAGTGCTTTCAGGACTTTAACAACCATAACTACGAGACGCACGCGC
TGCGTAGCTTGTGCGCCGTCGAGGTCAAGTCCTTTATGTCCGCCGCTGTC
AACACCGAGGTCTGTATGCGCCGCACCAACTTCATCAATAATCTTGGAGG
AAGCAAGTACTGCGATCCGCTCGAGGGACGGAATGTTTACGCCACCTTGT
ACCCCCGAAAGCCAGCAATCGAAAACAACTTGGAGACAGTCCATACGAAT
GAAAAGTTCATATTAGTAACCTGTCGCC
MXO03954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7012-PA | 2088 | nct-RA | 1..820 | 9..828 | 4100 | 100 | Plus |
| CG7012-PB | 1998 | nct-RB | 1..730 | 99..828 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RE | 2631 | CG7012-RE | 49..868 | 9..828 | 4100 | 100 | Plus |
| nct-RD | 2606 | CG7012-RD | 49..868 | 9..828 | 4100 | 100 | Plus |
| nct-RC | 2768 | CG7012-RC | 49..868 | 9..828 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24851986..24852645 | 169..828 | 3300 | 100 | Plus |
| 3R | 32079331 | 3R | 24851837..24851933 | 72..168 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 24851649..24851712 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:01 has no hits.
MXO03954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:01:59 Download gff for
MXO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7012-PA | 1..820 | 9..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:12 Download gff for
MXO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 44..868 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:24 Download gff for
MXO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 44..868 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:24 Download gff for
MXO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24851644..24851712 | 1..72 | 94 | -> | Plus |
| 3R | 24851838..24851933 | 73..168 | 100 | -> | Plus |
| 3R | 24851986..24852645 | 169..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:12 Download gff for
MXO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20677366..20677434 | 1..72 | 94 | -> | Plus |
| arm_3R | 20677560..20677655 | 73..168 | 100 | -> | Plus |
| arm_3R | 20677708..20678367 | 169..828 | 100 | | Plus |
