MXO03955.5prime Sequence
796 bp (461 high quality bases) assembled on 2007-07-18
> MXO03955.5prime
CAATCGACATGAATAGTCCTCGCTCGAACGCGGTTAATGGCGGCAGCGGC
GGCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCTCTGCGCGA
CAAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAACGGCAGCA
GCGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCAATCAGCCG
CCCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGCGGCGGAGG
CGCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCAGGAGAAGG
AGCACCAGCAGGAGCATAAGCCACAGAAGCCACCGCTCCCGGTGCGCCAG
AAGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTGCCCAATCA
GGTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCTGATGGTGG
TGGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCATGTTCCTG
TCGGACATCTACAACGCGGAACAGTATCCGGACCCCTCGCTGCGCAAAAA
GAAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGAGAACGGCG
TCAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTGATGCCGTT
GACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGCATAGCAAGTA
CGAGGAGTACCTGACAGCCGAGTCGCGCGTGTACCGAAAAACCATTTCAG
ACAGCCGGGTGCACTGCTGCCTCTACCTCATAGCGCCATCGGGACA
MXO03955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8705-PB | 1620 | pnut-RB | 1..788 | 9..796 | 3765 | 99.1 | Plus |
| CG8705-PA | 1620 | pnut-RA | 1..788 | 9..796 | 3765 | 99.1 | Plus |
| CG1403-PB | 498 | Sep1-RB | 38..74 | 367..403 | 160 | 97.2 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 38..74 | 367..403 | 160 | 97.2 | Plus |
| CG1403-PB | 498 | Sep1-RB | 286..318 | 615..647 | 140 | 96.9 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 286..318 | 615..647 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..992 | 9..796 | 3835 | 99.1 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..1574 | 9..796 | 3835 | 99.1 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 367..487 | 325 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8238844 | 9..796 | 3835 | 99.1 | Plus |
| X | 23542271 | X | 21359531..21359651 | 367..487 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 589..686 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:28 has no hits.
MXO03955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:04 Download gff for
MXO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8705-PA | 1..787 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:51 Download gff for
MXO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 779..1573 | 1..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:29 Download gff for
MXO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 779..1573 | 1..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:29 Download gff for
MXO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238049..8238843 | 1..795 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:51 Download gff for
MXO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125554..4126348 | 1..795 | 98 | | Plus |
