MXO03958.5prime Sequence
863 bp (829 high quality bases) assembled on 2007-07-18
> MXO03958.5prime
CAGTCGACATGGGTAGTGACTGGGACGAGATCAAGCGCTTGGCCGCCGAC
TTTCAGAAGGCGCAGCTCACGTCTACGCTGCAGAAGCTCTCGGAGCGAAA
CTGCGTGGAGATCGTCACGCTGCTGCTGGAGAAGCAGATGCTGGAGGTGG
TGTTCACCAACGATGGCAAGGAGTACATCACGCCGGATCATCTGGAGCGC
GAGATCCAGGACGAGTTGTACGTGAACGGAGGTCGTGCCAACTTGGTGGA
GGTCAGCAAAACCCTAAATGTGGATTTATCACGAATCGAGCTGCTTGCCG
AACGAATATCTGCGGAGAATCAAAGCGTACACCTGGTACTGGGACAGCTA
ATCGACGAGGACTACATCAGTCATATTGCGCAGGAGATCAACGAGAAGCT
GGTTCAGCGAGGAGAGGTTTCCATTTCGGAATTGGCTTCCCAGTTCGATC
TGCCGTCGGACTTCCTGCAACACGACGTGGTCGAAAAGCATCTAGGTAAG
ATTATTAAGGGTCGCCAGGATGCCTCAAATCCGCGGGTGTTCTTCACTCA
GGCCTACATCCAACGTTGCAAAGCGAAGATTCNGGGGAGCCCTGGCCGCC
ATTACCAGGCCCATAAATGTGGCTGTGATTCTTCAGAAGATCGGTGTGCA
GGAGAAGATCTTCTACTCGTTGCTGGACGAAATCGCGCCAGCTGGCCAGG
TTACCTCCAAGCAGGCCAACTCCCAATACGTGCCGCACATCTATGCCAAG
ACGCAGGCTGACTGGGTGAACTCGTTCTACAAGCAGAACAGCTTCCTTGA
GTATGATGCCATTCAAAAGCTGGGAATTTCGGATGCCAAGTCCTACATTC
GCAAGCAGTTCCC
MXO03958.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-PA | 2349 | CG1104-RA | 1..578 | 9..586 | 2871 | 99.8 | Plus |
| CG1104-PB | 2220 | CG1104-RB | 1..449 | 138..586 | 2226 | 99.7 | Plus |
| CG1104-PA | 2349 | CG1104-RA | 575..854 | 584..863 | 1400 | 100 | Plus |
| CG1104-PB | 2220 | CG1104-RB | 446..725 | 584..863 | 1400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 36..889 | 9..863 | 4250 | 99.9 | Plus |
| CG1104-RA | 2574 | CG1104-RA | 128..981 | 9..863 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7073406..7074182 | 863..86 | 3840 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7074248..7074325 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:45 has no hits.
MXO03958.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:14 Download gff for
MXO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-PA | 1..854 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:01 Download gff for
MXO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..981 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:32 Download gff for
MXO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..981 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:32 Download gff for
MXO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7073406..7074182 | 86..863 | 99 | <- | Minus |
| 3R | 7074249..7074325 | 9..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:01 Download gff for
MXO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2899128..2899904 | 86..863 | 99 | <- | Minus |
| arm_3R | 2899971..2900047 | 9..85 | 100 | | Minus |
