MXO03959.5prime Sequence
839 bp (764 high quality bases) assembled on 2007-07-18
> MXO03959.5prime
CAGTCGACATGCTAAATCTCCTACGAACCCGCCCAACGTCGGTGCCCCTC
ATCCGGGCCGCGCTTAGCGCTCCGCTGCACTCAACGGAAAACCGGCCGGG
TTACATAGTGCTGGTACCGGAGATCGGTGAGGAGGGACCGCTAGGCGAGG
GCGTGCTCAAGCCGGACGGACTTCCCGCCTTCAGTGACATCACCATCGAG
ATGTGCTTGGGCGCCATTGGTCAGCAGGCATCGGCGGTGGAGAACTCGGT
GAAGGCGCTGGAGAGCGACCTGCACAGTGGCAAGCAGCTAAATGCCGCCA
GCATCTTTCGGGAGCTGGACACCGTGACGGGTCCACTGGAGACGACATGG
GGTGTGGCCAAGGCTCTGTACCTGGGCAATTCTACCCTGATACCCACCAA
ATCCTACATGAACATCCACGAACGAGCGCGTAACGCTCGGGCAGCGAAGT
TCTGCAATCAAACGGTGTATAAGGCACTCAAGGATGCTTCGTCCGATTCG
GGTCCAGATGAGCAGAGGATGCGACAGAAGTTCCTGCTCGAGGGCAAGCT
GAACGGGCTCACGCTGGACAAAGATAAGCAGGATGGACTGAAAGAGCTGC
TTACCCATTTGGGTCGAGAGAGAGCCAACTTCAAGAACAAGGTCAACATG
GCAGTGCACTCGTTTGGACAGATTATTACGGACTTCAATCTTGTAAGAGA
TTTCCCGCCTTCGCTTCTTGAGGCAACAGCCCGCGATCCCGGACAACCTA
TGACGGGTCCTTGGAAGATAACCCTACAGCCTCAAGTGGTCGATGGTTTT
CTAAAGCACTGCCCAGAGCGAATGCAGCGTTGGAACGTC
MXO03959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-PA | 2193 | CG11771-RA | 1..831 | 9..839 | 4105 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2853 | CG11771-RA | 121..954 | 6..839 | 4140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24932294..24933020 | 113..839 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 24932130..24932237 | 6..113 | 510 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:21 has no hits.
MXO03959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:19 Download gff for
MXO03959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-PA | 1..831 | 9..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:37 Download gff for
MXO03959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 117..954 | 1..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:25 Download gff for
MXO03959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 117..954 | 1..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:25 Download gff for
MXO03959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24932126..24932236 | 1..112 | 95 | -> | Plus |
| 3R | 24932294..24933020 | 113..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:37 Download gff for
MXO03959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20757848..20757958 | 1..112 | 95 | -> | Plus |
| arm_3R | 20758016..20758742 | 113..839 | 100 | | Plus |
