MXO03962.5prime Sequence
851 bp (848 high quality bases) assembled on 2007-07-18
> MXO03962.5prime
CAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGCAACTGCCC
AATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGCCGTCCGTC
CACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCGTTACCGAT
TGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGGGATTAACG
ACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTGGAGCCGCA
GTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACATCGTGTTTG
GTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGGCTCTAATG
GTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTGGTGTGTTT
CCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACATGGGTGTAC
TGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCATGGCGGCG
GCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGTCTGACCAG
TCCTTCGAATGATTTACTGCNCCGCCTGGAAGAATTTCTTCACCCACTTG
ACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTCTGGTGTT
CCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAATCGTATAT
TCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGATCTTTGGC
ACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCTTCCGTGT
CACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCGCCCTTTA
G
MXO03962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5002-PA | 1788 | CG5002-RA | 1..562 | 9..570 | 2810 | 100 | Plus |
| CG5002-PA | 1788 | CG5002-RA | 563..842 | 572..851 | 1400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5002-RA | 1998 | CG5002-RA | 143..984 | 9..851 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17750771..17751071 | 24..324 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 17751130..17751357 | 324..551 | 1140 | 100 | Plus |
| 2R | 25286936 | 2R | 17751770..17751955 | 666..851 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 17751430..17751545 | 550..666 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:59 has no hits.
MXO03962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:27 Download gff for
MXO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-PA | 1..842 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:35 Download gff for
MXO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 135..984 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:21 Download gff for
MXO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 135..984 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:21 Download gff for
MXO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17750772..17751071 | 25..324 | 100 | -> | Plus |
| 2R | 17751131..17751355 | 325..549 | 100 | -> | Plus |
| 2R | 17751430..17751545 | 550..666 | 99 | -> | Plus |
| 2R | 17751771..17751955 | 667..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:35 Download gff for
MXO03962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13639276..13639460 | 667..851 | 100 | | Plus |
| arm_2R | 13638277..13638576 | 25..324 | 100 | -> | Plus |
| arm_2R | 13638636..13638860 | 325..549 | 100 | -> | Plus |
| arm_2R | 13638935..13639050 | 550..666 | 99 | -> | Plus |
