MXO03963.5prime Sequence
793 bp (780 high quality bases) assembled on 2007-07-18
> MXO03963.5prime
CAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCAGTGCCCCG
GAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAAAAAGAGGC
GGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGAGCAGAGCG
CTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAACACATCTAC
CTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTACATGCACCG
CGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGTAGTGACCG
CCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGCTGGGCATC
GAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAATCACTGAC
CACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGATCAGACAG
CCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCATTCGATTG
GGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGAGATGCCGT
ACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACACATCTACG
ACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAACTTCACTCG
GCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACCGTCATTTC
TGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAAGTACGACT
ACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCCAGCTAGA
MXO03963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3511-PA | 1914 | CG3511-RA | 1..785 | 9..793 | 3900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3511-RB | 2044 | CG3511-RB | 58..842 | 9..793 | 3910 | 99.9 | Plus |
| CG3511-RA | 2202 | CG3511-RA | 216..1000 | 9..793 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24572620..24572851 | 562..793 | 1130 | 99.1 | Plus |
| 2R | 25286936 | 2R | 24572124..24572328 | 177..381 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 24572384..24572569 | 380..565 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 24571906..24572074 | 9..177 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:54 has no hits.
MXO03963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:32 Download gff for
MXO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-PA | 1..784 | 9..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:16 Download gff for
MXO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..999 | 9..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:32 Download gff for
MXO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..999 | 9..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:32 Download gff for
MXO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24571906..24572074 | 9..177 | 100 | -> | Plus |
| 2R | 24572125..24572328 | 178..381 | 100 | -> | Plus |
| 2R | 24572386..24572569 | 382..565 | 100 | -> | Plus |
| 2R | 24572624..24572850 | 566..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:16 Download gff for
MXO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20459429..20459597 | 9..177 | 100 | -> | Plus |
| arm_2R | 20459648..20459851 | 178..381 | 100 | -> | Plus |
| arm_2R | 20459909..20460092 | 382..565 | 100 | -> | Plus |
| arm_2R | 20460147..20460373 | 566..792 | 99 | | Plus |
