MXO03964.5prime Sequence
891 bp (778 high quality bases) assembled on 2007-07-18
> MXO03964.5prime
CAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGCGTCTACTC
CCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAGACGCACAT
TAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCCGGATGGGA
CACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCCAGGCGCCC
ATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGCTTCAACCG
CACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCTCGCGAACA
CCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAGTGAGCACC
GACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCGGGAATGCG
GTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGAGTTTGCCT
ACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCGGAGAGGGC
ATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGATGGCTGAG
TCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCTAAGTGATG
TTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCTTTGGCGGC
AATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGAGCACCTCT
GGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACAACTGGTGC
TCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAATCACCAAAAA
TGGATAGTGGAAACTGGTCAAGTGCTGGTACAGAAATTGGGCTGCCAATT
TGAGGAGGCACCACGTCGCCAGTTGATGGGTTGTCTGAGGC
MXO03964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PA | 2058 | CG12869-RA | 1..883 | 9..891 | 4390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..1100 | 8..891 | 4405 | 99.9 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..1578 | 8..891 | 4405 | 99.9 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..1123 | 8..891 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14593883 | 222..891 | 3335 | 99.9 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 8..128 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 128..221 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:37 has no hits.
MXO03964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:37 Download gff for
MXO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:32 Download gff for
MXO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 232..1123 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:00 Download gff for
MXO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 232..1123 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:00 Download gff for
MXO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592753..14592881 | 1..128 | 96 | -> | Plus |
| 2R | 14592951..14593043 | 129..221 | 100 | -> | Plus |
| 2R | 14593214..14593883 | 222..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:32 Download gff for
MXO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480258..10480386 | 1..128 | 96 | -> | Plus |
| arm_2R | 10480456..10480548 | 129..221 | 100 | -> | Plus |
| arm_2R | 10480719..10481388 | 222..891 | 99 | | Plus |
