MXO03966.5prime Sequence
845 bp (779 high quality bases) assembled on 2007-07-18
> MXO03966.5prime
CAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAGAATCTTTG
AAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATCCCGGTCAT
CGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACATCGGAATGC
GCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCTACCTGACT
GGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTGCTCCATGT
TACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACTAATCGTTA
TTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCTTTCAGGAG
TGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCTGCCCGTCC
GGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGTGCGCTATG
CCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTGGCAATATC
TTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTGGCCCATCC
GGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAGGGCCGCCA
AGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCAAGGGTTCC
GCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAGAACACCAA
CCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATCCGATACGG
CTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAAAGGCCGAT
GTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCATTTC
MXO03966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11208-PA | 1707 | CG11208-RA | 1..837 | 9..845 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11208-RA | 1984 | CG11208-RA | 140..976 | 9..845 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20243823..20244413 | 845..255 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 20244483..20244682 | 257..58 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 20245198..20245249 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:30 has no hits.
MXO03966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:45 Download gff for
MXO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-PA | 1..837 | 9..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:33 Download gff for
MXO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 134..976 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:06 Download gff for
MXO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 134..976 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:06 Download gff for
MXO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20243823..20244412 | 256..845 | 100 | <- | Minus |
| 2R | 20244485..20244680 | 60..255 | 100 | <- | Minus |
| 2R | 20245199..20245255 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:33 Download gff for
MXO03966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16131328..16131917 | 256..845 | 100 | <- | Minus |
| arm_2R | 16131990..16132185 | 60..255 | 100 | <- | Minus |
| arm_2R | 16132704..16132760 | 1..59 | 93 | | Minus |
