MXO03969.5prime Sequence
791 bp (600 high quality bases) assembled on 2007-07-18
> MXO03969.5prime
CAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAATTGCGATC
CTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCCGTGTTGCA
TCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATATTGCCGCAT
ACGGAGTAGTGCCACTGAGAACGGATCGACTGCGCCGTCAAAGACGAACC
GTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGAGGCGCATT
GTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGCTGGCGGAG
GAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGGCAGCGGGC
GGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGCACTGGACA
GCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATACCACTAGCC
AAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGTCGGGCAAT
CCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACGGATCCCTC
ACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGTGCCCGAGG
AAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGAGCGTTGAC
TTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGACGAGGTGGC
CTCACTGTGGACCGAACTGAAGGCGACGCCCGACAATATCATGCTTTCAT
CGTCGCATCGCAGGGCCATGACGGTGGAGCTCATGTTTGAT
MXO03969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2221-PA | 1878 | l(1)G0289-RA | 1..783 | 9..791 | 3765 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 63..845 | 9..791 | 3825 | 99.2 | Plus |
| l(1)G0289-RB | 2328 | CG2221-RB | 63..845 | 9..791 | 3825 | 99.2 | Plus |
| l(1)G0289-RA | 2856 | CG2221-RA | 63..845 | 9..791 | 3825 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10359469..10360163 | 791..97 | 3385 | 99.1 | Minus |
| X | 23542271 | X | 10366124..10366211 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:24 has no hits.
MXO03969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:55 Download gff for
MXO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2221-PA | 1..783 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:58 Download gff for
MXO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 53..845 | 1..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:08 Download gff for
MXO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 53..845 | 1..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:08 Download gff for
MXO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10359469..10360163 | 97..791 | 99 | <- | Minus |
| X | 10366124..10366221 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:58 Download gff for
MXO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10253502..10254196 | 97..791 | 99 | <- | Minus |
| arm_X | 10260157..10260254 | 1..96 | 95 | | Minus |
