MXO03970.5prime Sequence
902 bp (780 high quality bases) assembled on 2007-07-18
> MXO03970.5prime
CAGTCGACATGCCGCGACGCTATCAAACAGCTCTCAATTCGGCCAAATAC
AGTGCCCAGGTCAAGACCAAAACTAGTGACAACGAATCCGATTCCGAAGA
TGATCTTCCGCCGGATCAAGATGCTGAGGATAACAATGAGCCAGATAATC
TGCGCAGCATTTTGGAAAATGCGCCGCACTTCTCTTATCCCGGCTTGAAC
ACTGGAATGTTGGGCCAACTCTTGTACGATCATCAGGATAATCCGAAGCA
GGACTTGCCAAATTGCTCGGTTACGGTGCCGCTACCCCTCTTCCTGGCAA
AGGATGGACAAACTCCCCGAGTGGAGGCATGCGTCCAAAGGCCATTCCGC
TACGACGATTGGACACGGCAATTGCAATTAGGCAAGGCTATATTTGATAG
GCGACTTAAAAATATGAGACAGCGTGTACAGAAGCAGGAGCAAGGTGTAC
ACGATGCCAGTCTGTTTGAGATGGCTGAGCACATAGCCCAACAGGAGAAT
TCCTTCTTCAGGGACAGCTACGATTACTACTACACAGGCGGAAACCTAAA
CACGATTCCGTTTGATGGAAACGATCAGCTNGGCCATGCATGTCAGCGGT
AATAAGCTCAGAGATTTGCACTTTTCCCGAGATTATGGTGAGGCGGAGTT
TTGGCAACCATTGCATTCGGCTACGATAGAGGAATCCTCCAGCGAAGTCT
TTGAACTTCTTCCGCTCCACAATTTAAATCGCAGTCAAATGTTCCTGGCA
CGGTTGCTGAAGGAGGTTTCCCTATACGAACTTAAATGCAAAGACGAACA
GGATTCGGATTCAGATTACGAACTCATTCGCCATTGCATGTTTAGCAGTC
AAGTAGCTCCCTTTTACAGCGCTGCACAATCATTGGCCAATGGCCATACA
TT
MXO03970.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10496-PA | 2529 | CG10496-RA | 1..572 | 9..580 | 2860 | 100 | Plus |
| CG10496-PA | 2529 | CG10496-RA | 573..851 | 582..860 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-RA | 2753 | CG10496-RA | 109..1003 | 7..902 | 4380 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21500653..21501548 | 902..6 | 4345 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:16 has no hits.
MXO03970.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:02:59 Download gff for
MXO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-PA | 1..893 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:55 Download gff for
MXO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 103..1003 | 1..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:39 Download gff for
MXO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1C-like-RA | 103..1003 | 1..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:39 Download gff for
MXO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21500653..21501550 | 1..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:55 Download gff for
MXO03970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17388158..17389055 | 1..902 | 99 | | Minus |
