MXO03972.5prime Sequence
811 bp (761 high quality bases) assembled on 2007-07-18
> MXO03972.5prime
CAGTCGACATGGAGGAATGCGATCACGGTTCGGCTGGCTGTGAAAACGTA
TCGCAGTTCATGCTCGATGACCTACAATTGGAGGCAGAGCTGGGAAAAAC
GCTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGAGTACAAGA
TTAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCAAGCACATT
AATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTACGAGCAGCT
GGAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCTAAATCTGG
AGAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCAACACGGAA
GTCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGCGATGCTCG
GCAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCAGCAGGAAC
GCTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTCACAGCATT
CAATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTAGATGTTAT
GGCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAGTAATGCCA
CCATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGGAATTGGTA
AAGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTGGCCGAACA
GCAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAATCCAAGACA
ACCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATGAGGGAACA
ATGTCCATGCA
MXO03972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1962-PA | 2373 | CG1962-RA | 1..803 | 9..811 | 3890 | 99.3 | Plus |
CG1962-PC | 2373 | CG1962-RC | 1..803 | 9..811 | 3890 | 99.3 | Plus |
CG1962-PB | 2373 | CG1962-RB | 1..803 | 9..811 | 3890 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cen-RB | 2706 | CG1962-RB | 135..937 | 9..811 | 3940 | 99.4 | Plus |
Cen-RA | 2841 | CG1962-RA | 270..1072 | 9..811 | 3940 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20680690..20681492 | 811..9 | 3940 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:31 has no hits.
MXO03972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:03:04 Download gff for
MXO03972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1962-PB | 1..802 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:43 Download gff for
MXO03972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cen-RA | 260..1071 | 1..810 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:31 Download gff for
MXO03972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cen-RA | 260..1071 | 1..810 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:31 Download gff for
MXO03972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20680691..20681500 | 1..810 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:43 Download gff for
MXO03972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20680691..20681500 | 1..810 | 98 | | Minus |